Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0985 ATGAAGAAACTAGAAAACTATCACGTGCTCTCTGCTAGAGGGAAGAGGAAGCACTTGAAGAGGCTCAAAGCTCCCAAACACTGGATGCTTGACAAGCTTGGAGGCGCTTTTGCTCCCAAGCCATCTCCTGGACCTCACAAGCTAAGGGAGTGCCTGCCCCTAATCCTTATCCTCCGAAACAAGCTTAAATATGCACTCACATATCGCGAGGTCATTTTAATTCTCATGCAACGACATGTTCTTGTTGATGGAAAAGTCAGAACCGACCAGAAGTACCCTGCTGGCTTTATGGATGTTGTATCAATTCCAAAAACGAACGAGTACTTCAGACTCCTCTATGACGTCAAGGGTCGTTTTCGCTTGCGATCAATAACAGAGGACGAGGCAAAGTTCAAGCTCTGTAAGGTGAGATCGGTGCAGTTTGGGAAAAGGGGCATTCCCTATCTGAACACATACGATGGGCGAACCATTAGATATCCTGACCCACTTATTAAAGCCAACGACACCATAAAACTTGACCTAGAGACCTATACTATCACCGACTTCATAAAGTTTGAAGTTGGGAATGTTGCGATGGTGACGGGTGGAAGGAACAGAGGACGAGTTGGGGTCATAAAGAGGAGGGAAAAACATATGGGCACCTTCGACACCATCCATGTCCAAGATGCTGTTGGAAACGAATTCGTAACTCGTCTGGAAAACGTTTTCATTATTGGTCACGGCTCAAAACCATGGGTCTCTTTACCCAAGGGAAAAGGAATTAAGCTAAGCATCATTGAAGAAGCTAGGCTCAGGCGTGAGACAGAAAGGGCTTCTTCAGCATAA 825 0.4582 MKKLENYHVLSARGKRKHLKRLKAPKHWMLDKLGGAFAPKPSPGPHKLRECLPLILILRNKLKYALTYREVILILMQRHVLVDGKVRTDQKYPAGFMDVVSIPKTNEYFRLLYDVKGRFRLRSITEDEAKFKLCKVRSVQFGKRGIPYLNTYDGRTIRYPDPLIKANDTIKLDLETYTITDFIKFEVGNVAMVTGGRNRGRVGVIKRREKHMGTFDTIHVQDAVGNEFVTRLENVFIIGHGSKPWVSLPKGKGIKLSIIEEARLRRETERASSA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0985 274 ProSitePatterns Ribosomal protein S4e signature. 18 32 IPR018199 -
Lele01g0985 274 Pfam S4 domain 57 100 IPR002942 GO:0003723
Lele01g0985 274 Gene3D - 11 127 IPR036986 GO:0003723
Lele01g0985 274 CDD S4 61 122 - -
Lele01g0985 274 PIRSF RPS4a_RPS4e 11 251 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lele01g0985 274 Pfam KOW motif 187 220 IPR005824 -
Lele01g0985 274 Pfam Ribosomal family S4e 105 179 IPR013845 -
Lele01g0985 274 Pfam RS4NT (NUC023) domain 13 49 IPR013843 -
Lele01g0985 274 SMART s4_6 52 116 IPR002942 GO:0003723
Lele01g0985 274 SMART kow_9 184 211 IPR005824 -
Lele01g0985 274 CDD KOW_RPS4 185 239 IPR041982 -
Lele01g0985 274 FunFam 40S ribosomal protein S4 132 182 - -
Lele01g0985 274 Gene3D - 185 255 IPR014722 -
Lele01g0985 274 Hamap 30S ribosomal protein S4e [rps4e]. 17 248 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lele01g0985 274 Gene3D - 132 182 IPR038237 -
Lele01g0985 274 FunFam 40S ribosomal protein S4 185 255 - -
Lele01g0985 274 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 13 263 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lele01g0985 274 Pfam 40S ribosomal protein S4 C-terminus 222 267 IPR032277 -
Lele01g0985 274 ProSiteProfiles S4 RNA-binding domain profile. 52 115 - -
Lele01g0985 274 FunFam 40S ribosomal protein S4 11 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0985 Lele-ChrLele01 5702286 5703723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0985 12 272 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 80.077 8.86e-160 442