Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0961 ATGGCTGAGTGGTTCTCTCTAGGTGGAAAACAATTAGGCCCACCACAAACGAAGGTAGAAAAAGGAAAAGAAGATAACAGCAACAGCAATTGTCTATTCTTGCTGAGCGAGAAGGAGATCTACAGCAGCAGCAGCAACAGCAAGGGAGGATTCGAGATATGGCCAGAGGCTTATCATTCATCAAACCAATCCTTGAGCAACAACTTCTCTCTTGGGGTGGGTCCTAGTTGTGCAAACTTGTTTGATGAGTCAACAAGGTTTGGATTAACGGTGATGAGGTCTGGGGCTCTAGGAAGCGGCATGAATTGTCAGGATTGCGGGAACCAAGCGAAGAAAGATTGCGCACATCTTAGATGCAGAACTTGCTGTAGAAGTCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTTCCCGCAGCCAAACGCCGTGAGCGGCAGCAACAGCACCTTATACAACAACATCGGCAACTTCCCTCTGGTGATACTTCCAAACGTCACAGAGAAACTCAAGGTGCAGCAGCCGCTCTTGCTCGCATTCCTTCACCTATCACCACCACAGGGTTGGAACTGGGACAATTGCCTCGCGAACTGAACTCACCAGCAGAGTTTCAGTGTGTGCGAGTTAACTCAATGGACACACCAGAAGAGCAGTACGCTTATCAAACCGCTGTTAACATTGGAGGGCATGTTTTCAAAGGAATCCTCTACGACCAAGGCCCTGATGCTCCTTATAACGCAGGTGGTGATCGAAGCTACTCCGCCGCCGCAGCTGATGCTGATCATCAAAATCTTAATCTCATAATGGCCTCAACCACGGCAGCTCCGGCGGCCAGCGCCAACCCGTTTTATCCTTCAATTTACCCTAACATCCCACTCAATACTTTCATGGCTGGTACGCAATTCTTCCCACCACCAAGATCCTAA 930 0.4925 MAEWFSLGGKQLGPPQTKVEKGKEDNSNSNCLFLLSEKEIYSSSSNSKGGFEIWPEAYHSSNQSLSNNFSLGVGPSCANLFDESTRFGLTVMRSGALGSGMNCQDCGNQAKKDCAHLRCRTCCRSRGFQCQTHVKSTWVPAAKRRERQQQHLIQQHRQLPSGDTSKRHRETQGAAAALARIPSPITTTGLELGQLPRELNSPAEFQCVRVNSMDTPEEQYAYQTAVNIGGHVFKGILYDQGPDAPYNAGGDRSYSAAAADADHQNLNLIMASTTAAPAASANPFYPSIYPNIPLNTFMAGTQFFPPPRS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0961 309 MobiDBLite consensus disorder prediction 1 27 - -
Lele01g0961 309 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 195 242 IPR006511 -
Lele01g0961 309 MobiDBLite consensus disorder prediction 147 176 - -
Lele01g0961 309 Pfam Domain of unknown function (DUF702) 100 243 - -
Lele01g0961 309 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 15 280 IPR007818 GO:0003700|GO:0006355
Lele01g0961 309 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 102 144 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0961 Lele-ChrLele01 5552176 5553625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0961 1 309 C2H2 Transcription Factor Family AT1G75520 42.500 4.79e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lele01g0961 DUF702 1.3e-61 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0104 28 608343 609410 Lele01g0961 01 5552176 5553625 CCT
Lele25g0099 25 625259 627705 Lele01g0961 01 5552176 5553625 CCT
Lele26g0109 26 624116 626566 Lele01g0961 01 5552176 5553625 CCT
Lele27g1986 27 24099494 24101929 Lele01g0961 01 5552176 5553625 CCT
Lele01g0961 01 5552176 5553625 Lele01g0961 01 5552176 5553625 ECH
Lele01g0961 01 5552176 5553625 Lele03g0957 03 5572198 5576493 hybridization
Lele01g0961 01 5552176 5553625 Lele04g0956 04 5916811 5918198 hybridization