Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0917 ATGACTGTGCCTCGCCCACGTCAGAAGTTGGACTTCGCTAGTTGACGATTCAGAGTTTTGATTGCGATACATGCCATGGCGGAGCTGGAGAATCCATCTTCAATGGAAGTTTCTGCAGCTTCCGGAGAAGCTAGCTTTTCACCCTCTGGCCTTCAGAACGCGCCCGATGAGCTTCCTCCCCTGAAAAAGAAGCGAAACCTCCCTGGAATGCCGGATCCAGATGCCGAAGTGATTGCTTTATCGCCCAAAACACTGTTGGCGACGAACCGTTTTGTGTGTGAGATCTGCAATAAAGGGTTTCAACGGGACCAAAACCTGCAACTTCATCGACGCGGCCACAACCTGCCATGGAAACTACGGCAGCGAACTAGCAAGGATGTTCGTAAGAGAGTCTACGTGTGCCCCGAGCCTTCCTGTGTCCACCATAACCCGACGAGGGCGCTAGGTGATCTCACCGGCATCAAGAAGCATTTTTGTAGGAAACATGGAGAAAAGAAGTGGAAATGCGAGCGTTGCTCCAAGAAGTACGCCGTACAGTCCGATTGGAAGGCTCATATGAAGACTTGCGGAACTAGAGAGTACAAATGTGACTGCGGCACCTTATTCTCTAGGAGGGATAGCTTCATTACGCATAGAGCCTTTTGCGATGCTTTGGCGGAAGAAAGCGCCAGAACCCGAACTCTAACCATGGGTGAAGGCTCCGAAGGGAATTCAAACGGGAAGGTTGCCCTGGCTTCGCCACCGCAGCGTCCACTAACTCCGTCAACGTCTGTGGTGTCTCCTGCTGTGTCCATCCAGAGCTCAGAAGTTTCGGAAAACCCAATCAGGTTGTCGCCGCCGTCCTCGAACGGAACGTGTTTACCAGCAACCACAGTCGTAAACAGTACTACTCCCTCCAGTTCTACCAGTGTTTTCGCCAGTATATTTGCATCCTCATCAAGTGCTGCTCCTTCTCAAACATCATCGCCACTTTCATCGTATTCTAGTATGATGTCGAACTTGGCTCGTTCGGATTGCCTAACTACTGCCCCAACGTTGTCTGCGATAGAGCCCACATCTCTGTCCCTCTCCACATCGCTTTATCTCTCCAATAATGACTCGTCACTGTTCCCGGACCAACGTGACCCTCGGCACTACACTGCACCTCCTCAGCCTGCACTGTCCGCCACCGCATTACTCCAAAAGGCAGCTCAAATGGGTGCCGCTGCGTCCAATGCATCTTTGCTTCGAGGTTTAGGCTTAACACAAAACGATAGTACCTCGACACAATGGAATATCCGTGTAAAGACGGAGAATCACTCGTTAACTGATGATGGCCTTGTACTTGGAATTCCTTCTGCTGGGAATACGGGTTTCGCCGACTTGATGATGGGCTCCTCCGCGGCGGCATTCGGAGGACGACCGATGACTCGTGATCTTCTTGGTCTAAGCATAGGAGGGGCCAGCGGCAGGGGTGGTCTTTCTGCTTTGCTTACCTCTTTTGGAGGTAGATTTGATGTTGCAGAATCATCGACAGGAGGGAGGAATGCTCCGTCTGCAGATTAG 1545 0.5159 MTVPRPRQKLDFASXRFRVLIAIHAMAELENPSSMEVSAASGEASFSPSGLQNAPDELPPLKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKDVRKRVYVCPEPSCVHHNPTRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARTRTLTMGEGSEGNSNGKVALASPPQRPLTPSTSVVSPAVSIQSSEVSENPIRLSPPSSNGTCLPATTVVNSTTPSSSTSVFASIFASSSSAAPSQTSSPLSSYSSMMSNLARSDCLTTAPTLSAIEPTSLSLSTSLYLSNNDSSLFPDQRDPRHYTAPPQPALSATALLQKAAQMGAAASNASLLRGLGLTQNDSTSTQWNIRVKTENHSLTDDGLVLGIPSAGNTGFADLMMGSSAAAFGGRPMTRDLLGLSIGGASGRGGLSALLTSFGGRFDVAESSTGGRNAPSAD 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0917 514 Gene3D Classic Zinc Finger 145 225 - -
Lele01g0917 514 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 45 482 IPR031140 -
Lele01g0917 514 MobiDBLite consensus disorder prediction 39 74 - -
Lele01g0917 514 FunFam protein indeterminate-domain 12-like 70 138 - -
Lele01g0917 514 Pfam Zinc-finger of C2H2 type 91 113 - -
Lele01g0917 514 SUPERFAMILY beta-beta-alpha zinc fingers 90 188 IPR036236 -
Lele01g0917 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Lele01g0917 514 MobiDBLite consensus disorder prediction 229 257 - -
Lele01g0917 514 MobiDBLite consensus disorder prediction 365 386 - -
Lele01g0917 514 Gene3D Classic Zinc Finger 71 136 - -
Lele01g0917 514 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Lele01g0917 514 SMART c2h2final6 167 187 IPR013087 -
Lele01g0917 514 SMART c2h2final6 132 162 IPR013087 -
Lele01g0917 514 SMART c2h2final6 91 113 IPR013087 -
Lele01g0917 514 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0917 Lele-ChrLele01 5310981 5314808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0917 38 493 IDZ Gene Family AT5G66730 52.906 3.71e-145 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele01g0917 zf-met 0.0037 CL0361