Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0906 ATGGCAAGTGGATTTGGGGAATCAACAAGCAGGTCGTCCCCAAGCCCTTCCTGCTCCAGCAACAATAATAACAATGACACGGGCAATTTTGAATGCAATATTTGCTTTGACTTAGCACAAGATCCTATAATTACTTTATGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCATTCTCAGTCACGAGAATGCCCAGTGTGCAAGGCCCTAATTGAGGAGAAAAAGTTGGTCCCTTTATATGGGAGAGGAAAGACATCAACTGACCCGCGATCGAAATCTATTCCAGGCGATAATATCCCTCATCGGCCAGCTGGTCAGAGACCTGAAACTGCCCCTCCACGAGCACCGAATCATTTTCATCAACATGGATTTGGATTTATGGGTGGGTTGGGAGGGTTTTCCCCAATGGCAACTGCAAGATTTGGGAATTTCACATTGTCAGCGGCATTTGGTGGTTTTATGCCATCCTTATTTAACTTCCAATCGCATGGATTTCATGGTGGGGCCATGTATAGTGTAGCTACTGGTTTTCCTTATGGATATGCTCCTTCATTTCATGGCGGCCATGCTCATGGGTACCGTCAGTATACAGGTCAAGGACAACAAGATTACCACCTGAAGAAGCTGCTTCTGTTTGTTGTTTTTTGTGTCGTTCTTACTCTATTGTTAGCTGCTGGTTCTGCTTTATGGCCTGCGGACTTGATTATTCTGCATGATTATCATTGTTCATAA 747 0.4418 MASGFGESTSRSSPSPSCSSNNNNNDTGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALIEEKKLVPLYGRGKTSTDPRSKSIPGDNIPHRPAGQRPETAPPRAPNHFHQHGFGFMGGLGGFSPMATARFGNFTLSAAFGGFMPSLFNFQSHGFHGGAMYSVATGFPYGYAPSFHGGHAHGYRQYTGQGQQDYHLKKLLLFVVFCVVLTLLLAAGSALWPADLIILHDYHCS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0906 248 SMART ring_2 32 72 IPR001841 -
Lele01g0906 248 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Lele01g0906 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 86 IPR013083 -
Lele01g0906 248 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
Lele01g0906 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 15 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele01g0906 248 MobiDBLite consensus disorder prediction 1 21 - -
Lele01g0906 248 CDD RING-HC_AtRMA_like 30 74 - -
Lele01g0906 248 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Lele01g0906 248 MobiDBLite consensus disorder prediction 86 120 - -
Lele01g0906 248 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Lele01g0906 248 SUPERFAMILY RING/U-box 28 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0906 Lele-ChrLele01 5242636 5244416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0906 13 212 C3H Transcription Factor Family AT1G19310 64.904 5.30e-86 253