Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0886 ATGGCTATCCGAGTTACTTTATCCTACTCCGGCTACTTCGCCCAGGGCCTGGCTTCCGCCGGTTGTCGTGCTGGCAATTCGCGTTGCCTCCACGAATGCTGGATCCGATCTCGCTTATTCGGCCCTAGCCAGAAGCTTGATCGTGATCCCTCCGGAGGCGTTCGTAATTACCGTTCCGATTACGGGCGGCCTGAAACGAATTGCTGGGCTAAGAAGTCAGCCTCCTTGTATTCTATTATCTCCAAAGAATTTCAGGGAGATAATTCTGATAATCCGATCATATTGGGTTTGATTTCGATTTTGAAGTCAACCGGTTCGGTATCGGCGTCATCTGCGGCGACTATGGCTGTATCTGGCGTTTCCCCGATTAACGCCTCTTCGATTATTCCCTTTTTAAAGGGATCGAAGAGCCTTCCTAGTAACGAGTCAACTCCCGGTCCTGCAACTTTTGAGGTGGATAAAGGAGGGACACTGTGTTATAGTGACATTGATGGTGTGAATTCAGGGTACGGTCCCAGAGGTCTTGAGAAGTCAAGTTGGTTATCGCGCGTGTTGAACGTCTGTTCAGAGGATGCGAAGGCCGTGTTTACTGCTGTGACTGTTAGTGTGCTCTTTAAATCGTTATTGGCTGAACCGAGATCGATTCCCTCGGCTTCTATGTACCCAACTCTGGACGTGGGTGACCGCATTTTAGAGGAGAAGGTTTCATTCCTCTTCAGAAAGCCTGATGTTTCAGATATAGTCATTTTTAAAGCACCTCCGAGTTTACAGGAAAAAGGTTTTAGTTCGGCTGATGTATTTATTAAGAGAATTGTGGCTAAGGCTGGGGACTGTGTAGAGGTTCGGGGTGGAAAACTGCTGGTGAATGGTGTTGCTCAAGAAGAAGAATTCGTTTTAGAACCCCTTTCTTATGAGATGGATCCAGTGGTTGTGCCAGAAGGTTACGTCTTCGTGTTGGGAGACAACCGTAATAACAGCTATGACTCACATAATTGGGGTCCGCTTCCTATAGAGAACATTGTTGGAAGATCCATGTTTCGGTACTGGCCTCCTTCTAAAGTATCTGACCCCCTCTATAGTTCACCAGCAAACAATTCTCTGGGCGTTTCTTGA 1113 0.4735 MAIRVTLSYSGYFAQGLASAGCRAGNSRCLHECWIRSRLFGPSQKLDRDPSGGVRNYRSDYGRPETNCWAKKSASLYSIISKEFQGDNSDNPIILGLISILKSTGSVSASSAATMAVSGVSPINASSIIPFLKGSKSLPSNESTPGPATFEVDKGGTLCYSDIDGVNSGYGPRGLEKSSWLSRVLNVCSEDAKAVFTAVTVSVLFKSLLAEPRSIPSASMYPTLDVGDRILEEKVSFLFRKPDVSDIVIFKAPPSLQEKGFSSADVFIKRIVAKAGDCVEVRGGKLLVNGVAQEEEFVLEPLSYEMDPVVVPEGYVFVLGDNRNNSYDSHNWGPLPIENIVGRSMFRYWPPSKVSDPLYSSPANNSLGVS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0886 370 CDD S26_SPase_I 211 343 IPR019533 GO:0004252|GO:0006465
Lele01g0886 370 ProSitePatterns Signal peptidases I signature 3. 316 329 IPR019758 GO:0004252|GO:0016020
Lele01g0886 370 PANTHER SIGNAL PEPTIDASE I 144 355 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele01g0886 370 FunFam Peptidase/ serine-type peptidase 217 348 - -
Lele01g0886 370 Gene3D Umud Fragment, subunit A 205 361 - -
Lele01g0886 370 PRINTS Bacterial leader peptidase 1 (S26A) family signature 311 330 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele01g0886 370 PRINTS Bacterial leader peptidase 1 (S26A) family signature 208 224 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele01g0886 370 PRINTS Bacterial leader peptidase 1 (S26A) family signature 267 279 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele01g0886 370 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Lele01g0886 370 SUPERFAMILY LexA/Signal peptidase 207 355 IPR036286 -
Lele01g0886 370 ProSitePatterns Signal peptidases I serine active site. 217 224 IPR019756 GO:0004252|GO:0016020
Lele01g0886 370 Pfam Signal peptidase, peptidase S26 192 349 IPR019533 GO:0004252|GO:0006465
Lele01g0886 370 TIGRFAM sigpep_I_bact: signal peptidase I 194 350 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0886 Lele-ChrLele01 5129795 5131732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0886 220 350 MADS-box Gene Family AT1G29960 34.586 4.21e-15 69.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0886 01 5129795 5131732 Lele01g0886 01 5129795 5131732 ECH
Lele01g0886 01 5129795 5131732 Lele03g0886 03 5151439 5153805 hybridization
Lele01g0886 01 5129795 5131732 Lele04g0885 04 5441078 5448388 hybridization