Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0873 ATGCAATCAAACGGTTCGGATTCCCAACAACAACAGCAACCATCGGAGCAGGATCAACGGCAACAGCAAACGCCAACGCAGACGCCGCCACCTCTACAGCCAGTGGCTCTGCCGCAGCAGTGGATGCCGATACAATACCCTGTGGCGGCTATGGTAATGCAGCATCCCATGTTGCCTCCCCAGCATTATGGGCCGCCGCCACCTCAGCCCTATATGCCTTACCACCAGTACCAGCAGTTACCGCATGCGACTCACCCTCAACAGCATCAGCATCAGGGATCCACCGCCGATAATAAAACGATCTGGGTCGGCGATTTACATCATTGGATGGATGAGAATTATCTCCATCGCTGCTTCGCTTCCACGGGAGAGATTTCCTCCATTAAGGTTATTCGCAACAAGCAGACTGGCCTATCAGAGGGTTATGGGTTTGTGGAATTCTATTCCCATGCCACGGCAGAAAACGTTTTGCAGAATTATGGCTCCATTTTGATGCCCAATACAGATCAACCTTTTCGCCTGAATTGGGCAACATTTAGCACAGGAGACAAGCGTTCGGATAATGTTCCCGACCTTTCCATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCATGTTGCATGAAACTTTTGCTAGTAGATATCCTTCTGTTAAGGCGGCAAAAGTTGTTTTTGATGCCAATACTGGTCGTTCAAAGGGTTATGGCTTCGTCAGATTTGGAGATGATAATGAGAGGTCTCAAGCTATGACTGAAATGAATGGTACGTATTGTTCTAGCAGACCAATGCGTATTGGTGCTGCAACCCCTAGGAAATCATCTGGCTACCAACAAGGTGGCCATGCGTCAAATGGAACATCCAACCAATCTGAAGCAGACTCAACAAACACGACTATATTTGTTGGAGGACTTGACCCTAATGTAACAGATGACGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTCAAGATACCTGTTGGAAAGGGATGTGGATTTGTACAATTTGCAAACAGGAACAATGCTGAAGAGGCATTGCAGAAGCTGAATGGGACAGTGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGCGGACTTTGGCAACCACTGGAGCGGGGCATATTATGGAGGTCATGTTTATGATGGTTATGGATATGCTTTGCCACCACCTCATGACCCAAGGATATATGCTGCTGCATATGGGTCTTACCCCATTTATGGAGGCCACCAACAACAAGTAAGCTGA 1287 0.474 MQSNGSDSQQQQQPSEQDQRQQQTPTQTPPPLQPVALPQQWMPIQYPVAAMVMQHPMLPPQHYGPPPPQPYMPYHQYQQLPHATHPQQHQHQGSTADNKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAENVLQNYGSILMPNTDQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGTYCSSRPMRIGAATPRKSSGYQQGGHASNGTSNQSEADSTNTTIFVGGLDPNVTDDDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPANKQFRADFGNHWSGAYYGGHVYDGYGYALPPPHDPRIYAAAYGSYPIYGGHQQQVS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0873 428 CDD RRM2_SECp43_like 191 270 - -
Lele01g0873 428 MobiDBLite consensus disorder prediction 1 35 - -
Lele01g0873 428 FunFam Polyadenylate-binding protein RBP47C isoform A 191 267 - -
Lele01g0873 428 FunFam Polyadenylate-binding protein RBP47 283 400 - -
Lele01g0873 428 Gene3D - 283 400 IPR012677 -
Lele01g0873 428 Gene3D - 98 178 IPR012677 -
Lele01g0873 428 SUPERFAMILY RNA-binding domain, RBD 286 398 IPR035979 GO:0003676
Lele01g0873 428 SUPERFAMILY RNA-binding domain, RBD 175 288 IPR035979 GO:0003676
Lele01g0873 428 CDD RRM3_NGR1_NAM8_like 297 368 - -
Lele01g0873 428 MobiDBLite consensus disorder prediction 272 304 - -
Lele01g0873 428 CDD RRM1_SECp43_like 100 180 - -
Lele01g0873 428 FunFam Polyadenylate-binding protein RBP47B 98 178 - -
Lele01g0873 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 271 IPR000504 GO:0003723
Lele01g0873 428 SMART rrm1_1 299 366 IPR000504 GO:0003723
Lele01g0873 428 SMART rrm1_1 193 267 IPR000504 GO:0003723
Lele01g0873 428 SMART rrm1_1 100 175 IPR000504 GO:0003723
Lele01g0873 428 Gene3D - 179 282 IPR012677 -
Lele01g0873 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 370 IPR000504 GO:0003723
Lele01g0873 428 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 90 374 - -
Lele01g0873 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 179 IPR000504 GO:0003723
Lele01g0873 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 264 IPR000504 GO:0003723
Lele01g0873 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 163 IPR000504 GO:0003723
Lele01g0873 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 363 IPR000504 GO:0003723
Lele01g0873 428 MobiDBLite consensus disorder prediction 261 304 - -
Lele01g0873 428 SUPERFAMILY RNA-binding domain, RBD 62 181 IPR035979 GO:0003676
Lele01g0873 428 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0873 Lele-ChrLele01 5041698 5044831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0873 100 396 Eukaryotic Initiation Factors Gene Family AT2G23350 26.403 1.45e-22 98.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0873 01 5041698 5044831 Lele25g0903 25 5771105 5777581 CCT
Lele01g0873 01 5041698 5044831 Lele26g0909 26 5842400 5847919 CCT
Lele01g0873 01 5041698 5044831 Lele27g1175 27 18904952 18911556 CCT
Lele01g0873 01 5041698 5044831 Lele28g0891 28 5749654 5755111 CCT
Lele01g0873 01 5041698 5044831 Lele01g0873 01 5041698 5044831 ECH
Lele01g0873 01 5041698 5044831 Lele03g0869 03 5063928 5067063 hybridization