Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0846 ATGGGAAATGTGAAGAGGGAAGTCAGAGGTGGCTGGCGTGAACAATATGAAAACGCAGGGTGTACTGGTTCTTTCTCTCTGCGCTGTCTCGTTAATGCGTTTACTTTGAGAGAGAAAGCAAGAATACGAAGGGAAGCGGCCAAACAGAAGCAGCCTCCCTGTGGCTTTTTCTCTTCAACTCTGACCATCTCAGAACGAATTCGCTCAAATAATAAATCAATAGAAATTTGCTATCTCTGGGAGCATAGGCCTTTGCTTGCTTGCTTGCTTTTATTCCCTGAGTTTTCATCCTCTGATTTTCCAATAGATCAGGATTTTCTGTTTTCATCTGTGCATGAGACTGGAAACTTACATATTCTCTCAATGCAAGGGACAAGGGGTAGAATAGGTTCCTTGCCTGAAACCTTGGAATTTGATTGTGGATCTAGTTCAAGTAATGCTACTGTGGATCAGCAAATTTGCTGGGATAGCACGAGGAACCCTGTAGAAAATCAAATGCCTCAATTTATGCTTTCTCCTATTGATATGAACCCATTGTATGCAAATTCAATTAACCACCAATGGAAGAGCATGAATAATTGGAGAATTGGTGTCCCAAGTTCCAGTGGTTCTCATATTGAAATTAACAGTGACGAGCAGCAAAGAGATCTTGGATGGTCATCTTCAACAAGTGCTAATGCTGTTACCGGTTCAAGATTAGAGCAGCACTTTGAACCAACCAGTTTACTTTCATTGGATAATGTCAATACAAGTCCTATGTGTATGAACAACTCCAATATTCATTGTGTAACACAGAATATCAGCCTAAATGCCAGTTCAGCAGACACTGGCTGTAATATGGCTCAACATCTTGAGCATCCTGGCTTGAGCAAATCAAGTGGATCAGTAAATGAGCCTATCCCACCTAATGTTGGTTCTGCGCCCTTTTCCCATCCTTCGGAAAGTAACATGGTAGAAAATAGTGGTGGTAGGCCCTGGTGTTCTCTTGATTCCCGTCGTGTATCTTGTAAAAGAAAGGCTGTTGAAGGATATGTTGGACAATCTTCAGGCGGTGAAAGTTCTAGCGGCAATCAGTGTACAGAAAGCAGTGCTTGGCATACACTTCCTACTCAGAGTAATTCGTGTAGCAGTTTAAGCAGATCTGCTTCGTCAGCACAGATAAGTTCAAGACCTGGCCCGGGTGTGGGCAATGAAGTTGGGGTTGGATCGTCAGAGGGCATTAATAATTTGAATGTTGCAGGAAGCTCAAATAGCTTCCTTAGGAATTCCCGTTCGAGGATAAATCCTTCAAACCAACAGGATTCCATTCCTTATGTCGTATTCTCAAATGGCAGCGTAACTAGGCGTTCTACAATTCCTTCATCATCTCCCATGACACAAAGTTTTTGTCCTCTGGATTTGAGGTCAGCATCATCTCCAGATGATATGGTTCCTCAAAGCCAGCCCCTTGGAACCAGTTCTCCTTCTTTACACAGGAATATGCCATCATTTAGATGGAGTGGCAGCTCTAACTCTAGAAACAGCCATTTGTCAAATTCAATTATTTGGTCAGACAGGGATAATCTACTACATGAAGAAGGAAGCCCAAGAAGCATGTCTAGAAGCATATTCGAACATCCAATGTTTGTGCAAGCGGCTGATTTAAGAAATTCGGTTCGAAATCCAACCAATAGGGCTTCAAGTAGTGCAAATTTAAATATATCAGGAAATGTAACTTCCTCGCTGCGTAGTGGGTCAAGTTCAGCCATCAATTCAACATCTGTTCCATCCTGGGTTTCTCGTCCCAATCCTCTACATCATACACGGAGGTTACCTGGTTATGTTCGTAGAACATTGTTGTCTTCTAGTTCCGGGGCTGCTGGAGGTTTCGGCAATAGCGATTCTTTCTTGCACTCGGCTCCTATTGCTTCATCTGAAGCGAGGGCACCATCATTTCGAGTTGGTAATCAAGGACGTCATCAGTCACACTCAAGATCATCATGGATGGAGAGGCGAGTTGATAGTAACTTCAGACTTCCCTATTCATTGCAAACTCTGGCTGTCGCCAGTGAAGGAAATAGTAGACTTGTATCTGAGCTCCGCAGTGTTTTGGGCCTCATGCGTAGGGGAGGGAACCTTCGGTTTGATGTTAGTTTTCCTATATTAATGGACTTTATGATCTTTGACCATTCAGTATTTTCTGGAATGGCTGATATTCATGACCGACACAGGGACATGCGACTTGATGTCGATAACATGTCTTACGAGGAGTTATTGGCTCTGGAAGAATGGATTGGAAATGTGAGTACTGGATTGAGCGAGGAAACTATATGGAAACTACTTAAACAGAGGAAGTATTCAGTTGAAGAAGGGTCTCAATGTGAGGCAGAACCCTGCTGTGTGTGTCAGGAAGAGTTTGATAACGGAGATGACGTCGGAACACTTGATTGTGGCCATGATTACCATACCAACTGCATCAAACAATGGCTAGTGCAGAAGAATCTGTGTCCCATTTGTAAGACAACAGGCTTGGCAACGTGA 2520 0.4317 MGNVKREVRGGWREQYENAGCTGSFSLRCLVNAFTLREKARIRREAAKQKQPPCGFFSSTLTISERIRSNNKSIEICYLWEHRPLLACLLLFPEFSSSDFPIDQDFLFSSVHETGNLHILSMQGTRGRIGSLPETLEFDCGSSSSNATVDQQICWDSTRNPVENQMPQFMLSPIDMNPLYANSINHQWKSMNNWRIGVPSSSGSHIEINSDEQQRDLGWSSSTSANAVTGSRLEQHFEPTSLLSLDNVNTSPMCMNNSNIHCVTQNISLNASSADTGCNMAQHLEHPGLSKSSGSVNEPIPPNVGSAPFSHPSESNMVENSGGRPWCSLDSRRVSCKRKAVEGYVGQSSGGESSSGNQCTESSAWHTLPTQSNSCSSLSRSASSAQISSRPGPGVGNEVGVGSSEGINNLNVAGSSNSFLRNSRSRINPSNQQDSIPYVVFSNGSVTRRSTIPSSSPMTQSFCPLDLRSASSPDDMVPQSQPLGTSSPSLHRNMPSFRWSGSSNSRNSHLSNSIIWSDRDNLLHEEGSPRSMSRSIFEHPMFVQAADLRNSVRNPTNRASSSANLNISGNVTSSLRSGSSSAINSTSVPSWVSRPNPLHHTRRLPGYVRRTLLSSSSGAAGGFGNSDSFLHSAPIASSEARAPSFRVGNQGRHQSHSRSSWMERRVDSNFRLPYSLQTLAVASEGNSRLVSELRSVLGLMRRGGNLRFDVSFPILMDFMIFDHSVFSGMADIHDRHRDMRLDVDNMSYEELLALEEWIGNVSTGLSEETIWKLLKQRKYSVEEGSQCEAEPCCVCQEEFDNGDDVGTLDCGHDYHTNCIKQWLVQKNLCPICKTTGLAT 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0846 839 CDD RING-H2_TTC3 791 833 - -
Lele01g0846 839 Pfam Ring finger domain 792 833 IPR001841 -
Lele01g0846 839 MobiDBLite consensus disorder prediction 343 402 - -
Lele01g0846 839 MobiDBLite consensus disorder prediction 286 300 - -
Lele01g0846 839 FunFam E3 ubiquitin-protein ligase MBR2 760 837 - -
Lele01g0846 839 SUPERFAMILY RING/U-box 779 835 - -
Lele01g0846 839 MobiDBLite consensus disorder prediction 347 391 - -
Lele01g0846 839 MobiDBLite consensus disorder prediction 283 324 - -
Lele01g0846 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 758 836 IPR013083 -
Lele01g0846 839 MobiDBLite consensus disorder prediction 469 492 - -
Lele01g0846 839 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 332 837 IPR045191 GO:0061630
Lele01g0846 839 MobiDBLite consensus disorder prediction 308 322 - -
Lele01g0846 839 SMART ring_2 792 832 IPR001841 -
Lele01g0846 839 MobiDBLite consensus disorder prediction 553 599 - -
Lele01g0846 839 MobiDBLite consensus disorder prediction 553 594 - -
Lele01g0846 839 ProSiteProfiles Zinc finger RING-type profile. 792 833 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0846 Lele-ChrLele01 4885758 4890800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0846 335 839 C3H Transcription Factor Family AT2G15530 37.051 1.11e-75 259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0867 28 5590110 5593115 Lele01g0846 01 4885758 4890800 CCT
Lele25g0873 25 5585800 5590462 Lele01g0846 01 4885758 4890800 CCT
Lele26g0885 26 5664529 5669839 Lele01g0846 01 4885758 4890800 CCT
Lele27g1206 27 19083783 19087627 Lele01g0846 01 4885758 4890800 CCT
Lele01g0846 01 4885758 4890800 Lele01g0846 01 4885758 4890800 ECH
Lele01g0846 01 4885758 4890800 Lele03g0839 03 4905029 4908464 hybridization
Lele01g0846 01 4885758 4890800 Lele04g0844 04 5163602 5167247 hybridization