Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0842 ATGGCACTCAAACAGGTGGCTCAGCGCTTCGGTGACGTTGTCGACATGTCTGCCTACGCTAATCGCCACGCATTTATCCACTTACCCCAGTGGGTTTTCCACGAACGCCGTGAACGGAAGGAAATAGACATTATGGAGCGTAAAGGAGTTATCACGCCTTCTGAGCCGTACGTTTGTGGTGTTTGCGGCCGCAAGTGTAAAACTAATATCGACCTCAAGAAGCATTTCAAGCAGCTCCATGAGCGAGAGCGTCAGAAAAAGCTGAATCGGATGAGGTCACTCAAGGGGAAAAAGCGTCAGCGTTATAAGGAGAGGTTCATATCTGGGAATCACAAGTACAATGAGGCGGTAAGGTCTTTGATTACCCCTAAGGTGGGATATGGGCTCGCATCCGAACTAAGGCGTGCCGGAGTATTTGTGAAGACGGTAGAAGATAAACCGCAAGCAGCTGATTGGGCACTGAAGAGGCAGATGCAACACTCAATGAGCCGAGGGATAGATTGGCTGTTTTTGTTCCCAAGAACAGAAGGAAGAGGGTCTTTTGCTGAAGAAGATGGTTTCTTTTCAATATCTCAATATGATGGAGAAACTGTTGTTACGAGCGATTTGGATGGAATAGTAGATGAGCTTGTTGCAATGAGAACCGAGTTTAATGTTAATGATCTGAGAAATGCAACATTTTCGTATGAGGATGAGGAACAAGGGTGGGTTTCAGAAGAACTGGATGATAATTATATTTATGAAAAGAATGAGAACTCACCCATACTTGGATGCTGGCTGCCTACGGTTTTGAAGCTTCCCAACTTCATTGTTGTATCACTGTTGGAAGGTGTGAATAGGGAAGGAAGTAATGCATGCATGGATGGTTGGCGCAAGAGGAAGGTGGGGGCAATGCAAGTTGGGAGGCAAAGGAAAAGGTCGATTCATGCATCTCTACTGTGCTGCTTAAAATGCGACTCAGCTCAGGAAGCACAACAGTTAAGTGTACAAGGGATGTTTGCCTCTGGTGGCGGTCTCCCTTGTAATCAACTAGAAATAGTTACAACCCCAATCTCCAAGTGA 1062 0.4595 MALKQVAQRFGDVVDMSAYANRHAFIHLPQWVFHERRERKEIDIMERKGVITPSEPYVCGVCGRKCKTNIDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKERFISGNHKYNEAVRSLITPKVGYGLASELRRAGVFVKTVEDKPQAADWALKRQMQHSMSRGIDWLFLFPRTEGRGSFAEEDGFFSISQYDGETVVTSDLDGIVDELVAMRTEFNVNDLRNATFSYEDEEQGWVSEELDDNYIYEKNENSPILGCWLPTVLKLPNFIVVSLLEGVNREGSNACMDGWRKRKVGAMQVGRQRKRSIHASLLCCLKCDSAQEAQQLSVQGMFASGGGLPCNQLEIVTTPISK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0842 353 ProSitePatterns Zinc finger C2H2 type domain signature. 59 80 IPR013087 -
Lele01g0842 353 Gene3D Classic Zinc Finger 35 116 - -
Lele01g0842 353 CDD PIN_LabA-like 67 171 - -
Lele01g0842 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 85 IPR013087 -
Lele01g0842 353 Coils Coil 77 97 - -
Lele01g0842 353 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0842 Lele-ChrLele01 4859895 4863777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0842 2 204 C2H2 Transcription Factor Family AT5G52010 69.951 5.19e-100 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele01g0842 None None None