Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0827 ATGGGATGGGATGGGAAGGAGGTCGGACAAGTGAAGTTTTTAGTTTTGTATGCTCGGGAGTTAGGAATCCAACTTCGAGGTTCCCAACCAGCGACAAGACCCGATCTGTTCGTCCCTGGGAAATTATCTGTTCATGAGCCCAGCCCGATAGCTCTGTCACTGTCTCTTCCGAGTCCCAAACGGCAAACGCTCTGCTCGGAATCTGTTTCACGAAACAGAAGACATAGCTTAAACCAGGGATTGACTACGATGATCTCAATCACTTCCGTTGAGCTAAACTACCTTGTCTTCCGCTACCTTCACGAATCAGGTTTTACGCATTCGGCATTTGCTTTTGGGCATGAGGCAGGGATTGATAAAAGCAGGATTGATGGTAATTTAGTTCCACCAGGCGCTCTTGTAACATTCATACAGAAAGGAATTCAACATATTGAGCTGGAGGCGATGAGTGGTGACCTTAAGCTGATTGGTGTCTGTGTTAGGTATATACAGAGTGATGCAGACCCAGATGACGATTTCTCATTTATACAACCTGTTGACCTTATTACAAAGGATCCTAATGAACTACACGATATGGTTAAAGCCAAAAGGGAAAATCTACGTCAACATAAGTTTGAAGCAAATAAAAAGGTGAATGATTTCAGTCAAGACACTGCAACTGAACAAGCTCGAGAAATGGATGAAGAGGGCAAGGAAAGGGAAAATGAACATGAAATTGATAAAACAAACCTAGAGAAAGAAGCAGAACAAGAAAAGGTTGAATGTAAAGAAATACAGCATTCAGATCAAAATGATGCGGAGAGGGACGAGGATAAGATTTTTGCTGAAAATATAGAAAATGAAACGCGTGGAGGACCTGAGCCAATGGAGATCTCCCCAAGTTCCACGTTTTTGCCTAGTGAGATTCCAACTTGTGACGTAAACATTTTGGAAGGTCATACCTCTGAGGTTTTCGCTTGTGCATGGAATCCATCAGGCTCGCTTCTTGCATCTGGATCTGGAGATTCAACAGCTCGGATTTGGAAAATTACAGAAGGAACTTTTAACACTAACATAAATGTTGTGGTGCTAAGGCACTTTAAAGGAAGAACTAGTGAGAAAAGCAAGGATGTGACAACACTAGACTGGAATGGGGATGGGACATTACTGGCAACTGGCTCTTATGATGGTCAAGCAAGAATATGGAGTAGTGATGGAGACTTGAAGAGCACATTAAACAAGCATAAAGGTCCAATCTTTTCTTTGAAATGGAATAAGAAGGGGGATTATCTTCTTAGTGGCAGCGTTGATAAAACTGCTATTGTATGGGATATAAAGACTGGGGAATGGAAACAACAATTTGAATTTCACTCTGCACCGACTCTTGATGTAGATTGGCGAAACAATGTTTCATTTGCAACATGTTCCACAGATAACATGATATATGTGTGCAAAATTGGAGAGAATCGGCCAATCAAAACTTTCTCAGGGCATCAGGGTGAAGTTAATGCTATCAAATGGGATCCAACAGGCTCTTTTCTGGCTTCTTGCTCAGATGATCACACTGCCAAAATTTGGAGTCTGAAGGAGGACAAGTATTTACATGATTTGAAGGAACATGTTAAGGAGATATATACCATTCGGTGGAGTCCTACTGGCCCCTGTACAAGCAACCCCAATCAGCCATTAGTTCTAGCAAGTGCCTCTTTCGACTCGACGATAAAGTTGTGGGATGTGGATGTAGGAAAAGTACTCTACAGCTTAAATGGTCATAGGGATCCTGTATATTCCATTGCATTCAGCCCAAATGGTGAGTATCTGGCGAGTGGTTCCATGGATAAGTGCATGCATATATGGTCTGTGAAGGAGGGGAAAATTGTGAAGACATATACCGGAAATGGTGGTATCTTTGAAGTTAGTTGGAACAACGATGGCGATAAAGTCGCGGCTTGTTATTCGAACAATATTGTTTGCGTATTGGATGTCCGAATGTAG 1974 0.4215 MGWDGKEVGQVKFLVLYARELGIQLRGSQPATRPDLFVPGKLSVHEPSPIALSLSLPSPKRQTLCSESVSRNRRHSLNQGLTTMISITSVELNYLVFRYLHESGFTHSAFAFGHEAGIDKSRIDGNLVPPGALVTFIQKGIQHIELEAMSGDLKLIGVCVRYIQSDADPDDDFSFIQPVDLITKDPNELHDMVKAKRENLRQHKFEANKKVNDFSQDTATEQAREMDEEGKERENEHEIDKTNLEKEAEQEKVECKEIQHSDQNDAERDEDKIFAENIENETRGGPEPMEISPSSTFLPSEIPTCDVNILEGHTSEVFACAWNPSGSLLASGSGDSTARIWKITEGTFNTNINVVVLRHFKGRTSEKSKDVTTLDWNGDGTLLATGSYDGQARIWSSDGDLKSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWDIKTGEWKQQFEFHSAPTLDVDWRNNVSFATCSTDNMIYVCKIGENRPIKTFSGHQGEVNAIKWDPTGSFLASCSDDHTAKIWSLKEDKYLHDLKEHVKEIYTIRWSPTGPCTSNPNQPLVLASASFDSTIKLWDVDVGKVLYSLNGHRDPVYSIAFSPNGEYLASGSMDKCMHIWSVKEGKIVKTYTGNGGIFEVSWNNDGDKVAACYSNNIVCVLDVRM 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0827 657 MobiDBLite consensus disorder prediction 220 248 - -
Lele01g0827 657 ProSitePatterns Trp-Asp (WD) repeats signature. 558 572 IPR019775 -
Lele01g0827 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 622 IPR001680 GO:0005515
Lele01g0827 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 351 IPR001680 GO:0005515
Lele01g0827 657 SUPERFAMILY WD40 repeat-like 305 655 IPR036322 GO:0005515
Lele01g0827 657 PANTHER WD40 REPEAT PROTEIN 87 656 IPR045183 GO:0003714|GO:0016575
Lele01g0827 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 364 396 IPR001680 GO:0005515
Lele01g0827 657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 364 396 - -
Lele01g0827 657 Coils Coil 232 261 - -
Lele01g0827 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 580 IPR001680 GO:0005515
Lele01g0827 657 SMART WD40_4 440 478 IPR001680 GO:0005515
Lele01g0827 657 SMART WD40_4 574 613 IPR001680 GO:0005515
Lele01g0827 657 SMART WD40_4 481 520 IPR001680 GO:0005515
Lele01g0827 657 SMART WD40_4 523 571 IPR001680 GO:0005515
Lele01g0827 657 SMART WD40_4 353 396 IPR001680 GO:0005515
Lele01g0827 657 SMART WD40_4 303 342 IPR001680 GO:0005515
Lele01g0827 657 SMART WD40_4 398 437 IPR001680 GO:0005515
Lele01g0827 657 SMART WD40_4 616 654 IPR001680 GO:0005515
Lele01g0827 657 ProSiteProfiles LIS1 homology (LisH) motif profile. 88 120 IPR006594 GO:0005515
Lele01g0827 657 FunFam F-box-like/WD repeat-containing protein TBL1XR1 85 188 - -
Lele01g0827 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 446 IPR001680 GO:0005515
Lele01g0827 657 PRINTS G protein beta WD-40 repeat signature 558 572 IPR020472 -
Lele01g0827 657 PRINTS G protein beta WD-40 repeat signature 424 438 IPR020472 -
Lele01g0827 657 PRINTS G protein beta WD-40 repeat signature 329 343 IPR020472 -
Lele01g0827 657 CDD WD40 307 613 - -
Lele01g0827 657 Gene3D - 85 149 - -
Lele01g0827 657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 405 442 - -
Lele01g0827 657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 346 - -
Lele01g0827 657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 488 522 - -
Lele01g0827 657 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 529 IPR001680 GO:0005515
Lele01g0827 657 Gene3D - 299 657 IPR015943 GO:0005515
Lele01g0827 657 ProSitePatterns Trp-Asp (WD) repeats signature. 424 438 IPR019775 -
Lele01g0827 657 Pfam WD domain, G-beta repeat 308 342 IPR001680 GO:0005515
Lele01g0827 657 Pfam WD domain, G-beta repeat 357 396 IPR001680 GO:0005515
Lele01g0827 657 Pfam WD domain, G-beta repeat 483 520 IPR001680 GO:0005515
Lele01g0827 657 Pfam WD domain, G-beta repeat 526 571 IPR001680 GO:0005515
Lele01g0827 657 Pfam WD domain, G-beta repeat 402 437 IPR001680 GO:0005515
Lele01g0827 657 Pfam WD domain, G-beta repeat 575 613 IPR001680 GO:0005515
Lele01g0827 657 MobiDBLite consensus disorder prediction 204 248 - -
Lele01g0827 657 Pfam LisH 91 116 IPR006594 GO:0005515
Lele01g0827 657 FunFam WD40 repeat-containing protein HOS15 299 657 - -
Lele01g0827 657 SMART Lish 88 120 IPR006594 GO:0005515
Lele01g0827 657 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 581 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0827 Lele-ChrLele01 4780877 4786192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0827 485 655 Miscellaneous Gene Families AT5G08390 30.058 3.15e-17 84.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0827 01 4780877 4786192 Lele01g0827 01 4780877 4786192 ECH
Lele01g0827 01 4780877 4786192 Lele03g0816 03 4785511 4790082 hybridization
Lele01g0827 01 4780877 4786192 Lele04g0820 04 5024391 5032476 hybridization