Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0813 ATGAAGTCCCCCACTGCCGCCGTCCCGTCCTTCCACTTCCAACCCTCCGACCTCCCCCACCTGGAGCCCTGCCCCTGGACCAAGCGAAAACGTTCCAAGCGTAGCCGCCTCGACCACCCGGACTGCTCCGAGGAAGAGTACCTCGCTCTCTGCCTCGTCATGCTAGCTCGCGACTCCACCGGTTCCGCCTCCTCACGCGACCGCCACATCTCGCCGACTCCCAAGCTCGCTTATAACTGTTCCGTCTGCAACAGAGCCTTTTCTTCCTACCAGGCTCTTGGCGGACACAAGGCCAGTCACAGGAAACTCGCTGGTGAAGATCACGGCACTTCTTCAAACGTCACCAGTACTGCTTCTGCCGCCACCTCCGCATCCAACTTTGGAGGCAGGCTCCACGAGTGTTCAATCTGCCACAAGTCCTTCCCTACCGGACAGGCCTTGGGCGGACACAAGCGTTGCCACTACGAGGGCGGCTCTAGCGGCAGCGTTTCCACCACCTCCGAAGGTGTGGGGTCCGCCCACCGCGGCTTCGATCTCAACATCCCCGCCTTCTCCTTGACGGCGGACGAGGAGGTGGAGAGCCCCCACCCACTGAAGAAGCCCCGCCTTTCCATGACAACCAACGACGAAATCCCTCAACGCTCGTGA 648 0.6157 MKSPTAAVPSFHFQPSDLPHLEPCPWTKRKRSKRSRLDHPDCSEEEYLALCLVMLARDSTGSASSRDRHISPTPKLAYNCSVCNRAFSSYQALGGHKASHRKLAGEDHGTSSNVTSTASAATSASNFGGRLHECSICHKSFPTGQALGGHKRCHYEGGSSGSVSTTSEGVGSAHRGFDLNIPAFSLTADEEVESPHPLKKPRLSMTTNDEIPQRS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0813 215 ProSitePatterns Zinc finger C2H2 type domain signature. 134 154 IPR013087 -
Lele01g0813 215 Gene3D Classic Zinc Finger 76 154 - -
Lele01g0813 215 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 154 IPR013087 -
Lele01g0813 215 SMART c2h2final6 132 154 IPR013087 -
Lele01g0813 215 SMART c2h2final6 78 100 IPR013087 -
Lele01g0813 215 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 30 183 IPR044653 GO:0003700
Lele01g0813 215 MobiDBLite consensus disorder prediction 188 215 - -
Lele01g0813 215 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Lele01g0813 215 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Lele01g0813 215 MobiDBLite consensus disorder prediction 1 38 - -
Lele01g0813 215 Pfam C2H2-type zinc finger 77 102 - -
Lele01g0813 215 Pfam C2H2-type zinc finger 132 155 - -
Lele01g0813 215 SUPERFAMILY beta-beta-alpha zinc fingers 78 154 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0813 Lele-ChrLele01 4714061 4714708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0813 26 211 C2H2 Transcription Factor Family AT1G27730 51.905 2.49e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele01g0813 zf-C2H2_6 1.6e-12 CL0361