Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0804 ATGGCATTCGCAGGAACAACCCAGAAATGCATGGCCTGTGAGAAAACTGTTTATCTGGTTGATAAGTTAACTGCAGACAGCCGAGTGTACCATAAGGCTTGCTTCCGATGCCATCATTGTAAAGGAACCCTTAAGCTTAGCAACTACAACTCTTTCGAGGGAGTTCTTTACTGCAAGCCCCACTTCGACCAATTGTTCAAAAGAACCGGAAGCCTTGAGAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAAAAAAGCATTGATAATGAGAAGCCTGCAGCGACCAAAGTGTCAAGTATGTTTGGTGGAACCAGGGATAAATGTGCTGGTTGTCAGAAAACAGCTTATCCAACGGAGAAGGTTACTGTGAATGGAACTCCATACCACAAGAGTTGTTTCAAATGTTGTCATGGAGGGTGTGTTATAAGTCCTTCCAATTACATTGCACACGAGGGCAAACTCTACTGCAAACATCACCATATGCAGCTGATCAAGGAAAAGGGCAATTTGAGCCAGCTTGAAGGTGACCGCGACAAGAGTTCAGTGCATGATTAA 561 0.4403 MAFAGTTQKCMACEKTVYLVDKLTADSRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLEKSFEGTPKIAKPEKSIDNEKPAATKVSSMFGGTRDKCAGCQKTAYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHMQLIKEKGNLSQLEGDRDKSSVHD 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0804 186 CDD LIM1_SF3 6 68 - -
Lele01g0804 186 PANTHER OS06G0237300 PROTEIN 4 93 IPR045268 -
Lele01g0804 186 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Lele01g0804 186 CDD LIM2_SF3 110 170 - -
Lele01g0804 186 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lele01g0804 186 FunFam LIM domain and actin-binding 1 4 74 - -
Lele01g0804 186 FunFam LIM domain and actin-binding 1 104 174 - -
Lele01g0804 186 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Lele01g0804 186 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lele01g0804 186 Pfam LIM domain 10 64 IPR001781 -
Lele01g0804 186 Pfam LIM domain 110 164 IPR001781 -
Lele01g0804 186 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lele01g0804 186 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lele01g0804 186 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Lele01g0804 186 SMART lim_4 109 161 IPR001781 -
Lele01g0804 186 SMART lim_4 9 61 IPR001781 -
Lele01g0804 186 Gene3D Cysteine Rich Protein 105 174 - -
Lele01g0804 186 Gene3D Cysteine Rich Protein 4 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0804 Lele-ChrLele01 4664450 4665773 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele01g0804 LIM 1.6e-11 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0816 25 5254527 5256773 Lele01g0804 01 4664450 4665773 CCT
Lele26g0828 26 5314101 5317763 Lele01g0804 01 4664450 4665773 CCT
Lele27g1262 27 19436313 19438919 Lele01g0804 01 4664450 4665773 CCT
Lele01g0804 01 4664450 4665773 Lele01g0804 01 4664450 4665773 ECH
Lele01g0804 01 4664450 4665773 Lele03g0797 03 4665025 4666476 hybridization
Lele01g0804 01 4664450 4665773 Lele04g0797 04 4886545 4887950 hybridization