Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele01g0804 | ATGGCATTCGCAGGAACAACCCAGAAATGCATGGCCTGTGAGAAAACTGTTTATCTGGTTGATAAGTTAACTGCAGACAGCCGAGTGTACCATAAGGCTTGCTTCCGATGCCATCATTGTAAAGGAACCCTTAAGCTTAGCAACTACAACTCTTTCGAGGGAGTTCTTTACTGCAAGCCCCACTTCGACCAATTGTTCAAAAGAACCGGAAGCCTTGAGAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAAAAAAGCATTGATAATGAGAAGCCTGCAGCGACCAAAGTGTCAAGTATGTTTGGTGGAACCAGGGATAAATGTGCTGGTTGTCAGAAAACAGCTTATCCAACGGAGAAGGTTACTGTGAATGGAACTCCATACCACAAGAGTTGTTTCAAATGTTGTCATGGAGGGTGTGTTATAAGTCCTTCCAATTACATTGCACACGAGGGCAAACTCTACTGCAAACATCACCATATGCAGCTGATCAAGGAAAAGGGCAATTTGAGCCAGCTTGAAGGTGACCGCGACAAGAGTTCAGTGCATGATTAA | 561 | 0.4403 | MAFAGTTQKCMACEKTVYLVDKLTADSRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLEKSFEGTPKIAKPEKSIDNEKPAATKVSSMFGGTRDKCAGCQKTAYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHMQLIKEKGNLSQLEGDRDKSSVHD | 186 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele01g0804 | 186 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
Lele01g0804 | 186 | PANTHER | OS06G0237300 PROTEIN | 4 | 93 | IPR045268 | - | |
Lele01g0804 | 186 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 136 | 175 | - | - | |
Lele01g0804 | 186 | CDD | LIM2_SF3 | 110 | 170 | - | - | |
Lele01g0804 | 186 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
Lele01g0804 | 186 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
Lele01g0804 | 186 | FunFam | LIM domain and actin-binding 1 | 104 | 174 | - | - | |
Lele01g0804 | 186 | ProSiteProfiles | LIM domain profile. | 108 | 168 | IPR001781 | - | |
Lele01g0804 | 186 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
Lele01g0804 | 186 | Pfam | LIM domain | 10 | 64 | IPR001781 | - | |
Lele01g0804 | 186 | Pfam | LIM domain | 110 | 164 | IPR001781 | - | |
Lele01g0804 | 186 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
Lele01g0804 | 186 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
Lele01g0804 | 186 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 102 | 135 | - | - | |
Lele01g0804 | 186 | SMART | lim_4 | 109 | 161 | IPR001781 | - | |
Lele01g0804 | 186 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
Lele01g0804 | 186 | Gene3D | Cysteine Rich Protein | 105 | 174 | - | - | |
Lele01g0804 | 186 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele01g0804 | Lele-ChrLele01 | 4664450 | 4665773 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LIM | Lele01g0804 | LIM | 1.6e-11 | CL0167 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele25g0816 | 25 | 5254527 | 5256773 | Lele01g0804 | 01 | 4664450 | 4665773 | CCT | |
Lele26g0828 | 26 | 5314101 | 5317763 | Lele01g0804 | 01 | 4664450 | 4665773 | CCT | |
Lele27g1262 | 27 | 19436313 | 19438919 | Lele01g0804 | 01 | 4664450 | 4665773 | CCT | |
Lele01g0804 | 01 | 4664450 | 4665773 | Lele01g0804 | 01 | 4664450 | 4665773 | ECH | |
Lele01g0804 | 01 | 4664450 | 4665773 | Lele03g0797 | 03 | 4665025 | 4666476 | hybridization | |
Lele01g0804 | 01 | 4664450 | 4665773 | Lele04g0797 | 04 | 4886545 | 4887950 | hybridization |