Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0799 ATGCCTTCAGGTGGTGGCGCCGAGGTGCTCGATCTAGACACTGCTGTGAAAGGCGGGGTTTTGGACTGCAAAGCTGCTCTTCCTGGCGATGGTTGCAGCGATGACAAAATAGATCTGAAGATGTTGATTGAAGAGCTGGATTCGGTTCATGTGCCCTCCGTGTTCGTCTGTCCAATTTCGCTAGAGCCCATGCGAGAGCCTGTGACCCTTTGCACGGGTCAGACCTATGACAGATCCAACATTATCAAATGGTTCGCTTTGGGTCATAACACCTGCCCCACAACCATGCAGGAGCTTTGGGACTATTCAGTGACGCTGAACAGAACTCTCAGTCAATTAATCCACAGTTGGTTCTCGCAGGAGTACCTCTCATTGAAGAAGCAGTTCCAGGATGTGCAAGGAAGAGCTCTGGAGCTCTTAGAGGCACTCAAGAAGATGAAGGGTCAAGCCAGAGTTCAAGCTCTTCGAGATCTCAGGCTGATTGTCACTGCCCATGCGTCCACAAGGAAGACAGTAGAAAATGGTGGGCTTGATTTAATTTCTTCTTTACTGGGTCCTTTCACTTCCCACGCAGTTGGGTCGGAAGCAATTGGAATTCTAGCGAACTTGGATTTGAATTCAGAGTGGAAGAGAAATCTGATGCATCCGGCGAAGATATCATTGTTGGTCGATGTTATGAACGAAGGAACGATTGAGACCAAGATGAACTGTGCCAAATTGATTGAAGCATTGTTGATGGAGGTGGATGAGTCAGAGACGGAGATTTTGTCAAGCTTGAGTCTTCTGGTCGGATTATTGAGGTTAGTGAGGGATAAGAAACACCCAACAGGGGTCATAACTGGACTCATGTTACTGAAGACAATCTGTTCCCACGAATCAGTGAGAAGCTCCATGGTAAGCGTAGGAGCAGTTTCTCAGTTGATTGAGCTTCTTCCAAGTTTAAACCATGAGTCCCTGGAGATAGCCCTGTATATTCTAGAGGTATTGTCAACACTTCCAGAGGGAAGACTGGCATTGAAAGAGTGCCCGAACATCATACCCAATGTGGTGAAGTTAATGATGAGGGTATCAGAGAGCAGCACTCAATTCGCATTGTCAATATTGTGGGCTATCTTCAAGCTTGCCCCTGAGGAATGTGCGTCACAGGCCGTGGAGGCAGGTTTGGCCCCCAAGTTGCTGCTCGTGATTCAGAGTGGTTGCAACCCAGTGTTGAAGCAGATGTCTACCGAGTTCTTGAAAATGTGCAGTATCAATTACTCCACTAGTCTCTTGATCTCTAAATGTATGCTCAGCAGAACAATACGATGA 1308 0.4725 MPSGGGAEVLDLDTAVKGGVLDCKAALPGDGCSDDKIDLKMLIEELDSVHVPSVFVCPISLEPMREPVTLCTGQTYDRSNIIKWFALGHNTCPTTMQELWDYSVTLNRTLSQLIHSWFSQEYLSLKKQFQDVQGRALELLEALKKMKGQARVQALRDLRLIVTAHASTRKTVENGGLDLISSLLGPFTSHAVGSEAIGILANLDLNSEWKRNLMHPAKISLLVDVMNEGTIETKMNCAKLIEALLMEVDESETEILSSLSLLVGLLRLVRDKKHPTGVITGLMLLKTICSHESVRSSMVSVGAVSQLIELLPSLNHESLEIALYILEVLSTLPEGRLALKECPNIIPNVVKLMMRVSESSTQFALSILWAIFKLAPEECASQAVEAGLAPKLLLVIQSGCNPVLKQMSTEFLKMCSINYSTSLLISKCMLSRTIR 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0799 435 CDD RING-Ubox_PUB 55 97 IPR045210 -
Lele01g0799 435 SUPERFAMILY RING/U-box 46 120 - -
Lele01g0799 435 PANTHER WDSAM1 PROTEIN 47 422 IPR045185 GO:0061630
Lele01g0799 435 ProSiteProfiles U-box domain profile. 50 124 IPR003613 GO:0004842|GO:0016567
Lele01g0799 435 Gene3D - 134 425 IPR011989 -
Lele01g0799 435 Pfam U-box domain 51 120 IPR003613 GO:0004842|GO:0016567
Lele01g0799 435 SUPERFAMILY ARM repeat 139 264 IPR016024 -
Lele01g0799 435 SUPERFAMILY ARM repeat 256 418 IPR016024 -
Lele01g0799 435 SMART Ubox_2 54 117 IPR003613 GO:0004842|GO:0016567
Lele01g0799 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 133 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0799 Lele-ChrLele01 4634526 4635833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0799 4 435 U-box Gene Family AT3G49810 60.739 0.0 512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0799 01 4634526 4635833 Lele25g0795 25 5077841 5083163 CCT
Lele01g0799 01 4634526 4635833 Lele26g0807 26 5136283 5140092 CCT
Lele01g0799 01 4634526 4635833 Lele27g1281 27 19590751 19595243 CCT
Lele01g0799 01 4634526 4635833 Lele28g0794 28 5071075 5075986 CCT
Lele01g0799 01 4634526 4635833 Lele01g0799 01 4634526 4635833 ECH
Lele01g0799 01 4634526 4635833 Lele03g0792 03 4631975 4634497 hybridization
Lele01g0799 01 4634526 4635833 Lele04g0789 04 4837115 4838428 hybridization