Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0729 ATGGATGGCGATAATAGGAATCGAGTTCCAACACCCGGCGAAGCAGCCACGACGGAGAAGAAAACAGCTAATGCAGGCGAAGTGATGGTGGCGATCTCTGTCCAAGACTCCAAAGTGTCTGAATGCAATGACGTCAATACTGGGTATGCTGCATCGAAGTCTCCACGTTTAAACGGTGCTTCCCCTGAAATACGGTTCAGTCCCAGCCCAAGGAAGCCACCCAAGCATCCTCTTGTCAACGAACACCCTGTTCTAAGAAAGTCGCTGTCGAGGTCAGTGTATTCAAAACCCAAATCAAGATTTGGGGAACAACCTTATCCTGTTGATGCCACATTGTTCGAGGATAACATTGATTTCACATTGCAAGAACAGTTGGCTGTTCATTCACCATATAGAAACTTCAACAAGGGGTCACCAAATAACAAATCCAGGATTGTTAATAGAACAGCTTCCATAACTTCTTCCACCATCACTCCCAAGACTCCCTTCGTGGCATCTCCAGGGCCTGCTGGGGAGGATGAGGACGAAATCTTTTGTAGGAAAGTTGAATTGTGTAAAGGGAGGCGCAGGAGAGTAACCACTAAGGTTTTGATCGAATGGATTGTATTTGTATGCATCATGGGGTGTCTAGTGGTTAGCTTGACTGTTGATAAACTGAAAAACACGATCATTTGGAGTTTGGAGTTTTGGAAATGGTGTGTGCTTGTGTTGGTCATCTTCTGTGGCATGTTAGTCACAAACTGGATAATGCACATCATCGTGTTCTTGATTGAACTGAACTTTTTGCTGAGGAAAAAGGTGCTATATTTTGTTCATGGACTGAAGAAGAGTGTTCAGGTCTTTATTTGGCTGGGTTTGATTCTTGTCGCTTGGGTTCTGTTAATCAATCAAAGGGCCCAGCGATCTAAACTCACCACAAAAATTTTGAATGGTGTAACACAGACTCTTATTTCTCTTCTCATTGGAGTATTCTTATGGTTCTTTAAGACATTGTCTCTAAAGATATTAGCATCAAAATTCCACGTCAGATCTTTCTTTGATAGAATTCAGGAATCAATCTTTTATCAGTATGTTCTGCAGACACTGTCAGGGCCTCCACTTATGGAGGAGGCAGAGAAGGTAGGGAGATCACCTAGTATTGGTCAATTTAGTTTTAGGAGTACAAAAGGTAAAGGGGGCGTAAAGAAAGAGGTAATTGATGTAGCAAAGCTTCACCGGATGAAACAAGAGAAGGTTTCTGCTTCCACCATGAAGATTTTGGTTGATGCGGTGACCAATTCAAGGTTGTCCACTATCTCTAATGCACTAGATGAAACTTTTGAACAAACTGATAAAGAGATTACCAATGAGATGGAAGCAACTGCTGCTGCCCATCACATTTTCAGAAATGTTGCAAGCCCAGGTTCCTTGTACATTGATGAAGATGACCTTCGGAGGTTCATGATTAAGGAAGAAGTGAATCTGGTGTTTCCCCTGTTTGATGGAGCAGAAACTGGACGAATTGACAGAAAGGCCTTAACAAGATGGGTGTTGAAGGTTTATCAGGAGCGCAAAGCATTGGCACATGCCTTGAGTGACACCAAAACAGCAGTGAAACAGCTAAGTAAGCTTGTGTCGGGGATTCTGGTGGTTGTGACCATAGTTGTGTGGCTTCTACTGATGGAGATTGCCACTACGAAAGTACTTTTGTTCTTCTCATCACAGCTAGTACTCGTTGCTTTCATGTTTGGAAACACATGCAAGAACATATTCGAAGCTATTATCTTTGTGTTTGTGATGCATCCCTTTGATGTTGGTGATCGATGTGTTGTTGATGGTGTTCAGCTACTGGTTGAAGAAATGAACATATTGACAACGATCTTCTTGAAGCTTGATAATGAAAAGGTGTATTATCCAAACTCAGTTCTAGCCACGAAACCCATTAGCAATTATTACAGAAGTCCAGATATGGGAGACACTGTAGAGTTCTGTGTTGATTTCATGACACCATTGGAGAAGATTGGGGCCCTGAAAGAAAAAATAAAGAGGTACTTGGAGAGAAATCCACAACATTGGCATCCTAGTCACAATGTTGTAGTAAAGGAGATTGAAAATGTGAACAAGATAAAGATGGCTCTGTATGTAACCCACACAATGAACTTCCAAGAGTGGGTGGTGAAGAACAAGCGAAGAACTGAACTGGTGATGGAAATAAAGAAAATATTTGAAGAGCTCAATATCAGATACAATCTTCTTCCCCAAGCGGTTCATCTCAGCAATACATCTCATTCGCCTGATCACTCAATTTTGTGA 2292 0.4193 MDGDNRNRVPTPGEAATTEKKTANAGEVMVAISVQDSKVSECNDVNTGYAASKSPRLNGASPEIRFSPSPRKPPKHPLVNEHPVLRKSLSRSVYSKPKSRFGEQPYPVDATLFEDNIDFTLQEQLAVHSPYRNFNKGSPNNKSRIVNRTASITSSTITPKTPFVASPGPAGEDEDEIFCRKVELCKGRRRRVTTKVLIEWIVFVCIMGCLVVSLTVDKLKNTIIWSLEFWKWCVLVLVIFCGMLVTNWIMHIIVFLIELNFLLRKKVLYFVHGLKKSVQVFIWLGLILVAWVLLINQRAQRSKLTTKILNGVTQTLISLLIGVFLWFFKTLSLKILASKFHVRSFFDRIQESIFYQYVLQTLSGPPLMEEAEKVGRSPSIGQFSFRSTKGKGGVKKEVIDVAKLHRMKQEKVSASTMKILVDAVTNSRLSTISNALDETFEQTDKEITNEMEATAAAHHIFRNVASPGSLYIDEDDLRRFMIKEEVNLVFPLFDGAETGRIDRKALTRWVLKVYQERKALAHALSDTKTAVKQLSKLVSGILVVVTIVVWLLLMEIATTKVLLFFSSQLVLVAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTIFLKLDNEKVYYPNSVLATKPISNYYRSPDMGDTVEFCVDFMTPLEKIGALKEKIKRYLERNPQHWHPSHNVVVKEIENVNKIKMALYVTHTMNFQEWVVKNKRRTELVMEIKKIFEELNIRYNLLPQAVHLSNTSHSPDHSIL 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0729 763 MobiDBLite consensus disorder prediction 45 84 - -
Lele01g0729 763 PIRSF Memb_At2g17000 2 761 IPR016688 -
Lele01g0729 763 Gene3D - 595 644 IPR023408 -
Lele01g0729 763 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 14 754 IPR016688 -
Lele01g0729 763 SUPERFAMILY Sm-like ribonucleoproteins 585 644 IPR010920 -
Lele01g0729 763 FunFam Predicted mechanosensitive ion channel 595 644 - -
Lele01g0729 763 MobiDBLite consensus disorder prediction 1 26 - -
Lele01g0729 763 Pfam Mechanosensitive ion channel 536 741 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0729 Lele-ChrLele01 4282368 4285019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0729 19 752 Mechanosensitive Ion Channel Family AT5G12080 59.707 0.0 860
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0729 01 4282368 4285019 Lele01g0729 01 4282368 4285019 ECH
Lele01g0729 01 4282368 4285019 Lele02g0711 02 4304328 4307042 ECH
Lele01g0729 01 4282368 4285019 Lele03g0727 03 4294136 4296787 hybridization
Lele01g0729 01 4282368 4285019 Lele04g0728 04 4460346 4462430 hybridization