Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0712 ATGGCGTCTCCGAGTTCTGCGAATGTGAGTGATCATGAGAGTTTAAAGTACAAAGGCGTGAGGAAGCGAAACTGGGGCAAATGGGTATCTGAAATCAGACTTCCCAACAGCCGTGAACGCATTTGGCTCGGCTCTTATGATTCTGCAGAGAAGGCTGCTCGAGCCTTTGATGCTGCACTCTTCTGTTTACGTGGTGAGCGAGCCAATTTCAACTTCCCTGACACTCCTTTTCTCTTTCATCTTCCTCATGATCATCATCAATCTCTTACCCATCCCCAGATTAAGCTTCTTGCTTCTTCCTTTGCCAAACAGTTCCACCACCACGATCCGCCGCCGCCGGAGCCACCCCATCATCATGAAGAACCATCATCAGCCGAATTTCATTCTAGTCCTGGATCAGTGTCGGAGACAGGTTCCAGTACGTGTACTTCTTCGCCTTCTTGTGTGCAAGTGGAAGTGGACCACGGCGATGACAGCAGCATGGATTGGTCATTTTTGAACTCGCTTGATTATTACAATGACCTTGGTGCCGTCGACTGTGGACTCTATTCCGAGTTAGATTACTTCCAGTTTGGTGAGTCGACGTCCGAGTTATCTCTCACATCCCCAGCCGTGCTTTTCGACTACAATGCCCAAGAAAATCATTACGATGCTTATTCTCACAATTCATCATCATTCCTTTGGAACTTCGGATACGAGGATTCTTAG 708 0.4774 MASPSSANVSDHESLKYKGVRKRNWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALFCLRGERANFNFPDTPFLFHLPHDHHQSLTHPQIKLLASSFAKQFHHHDPPPPEPPHHHEEPSSAEFHSSPGSVSETGSSTCTSSPSCVQVEVDHGDDSSMDWSFLNSLDYYNDLGAVDCGLYSELDYFQFGESTSELSLTSPAVLFDYNAQENHYDAYSHNSSSFLWNFGYEDS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0712 235 FunFam Ethylene-responsive transcription factor 2 16 74 - -
Lele01g0712 235 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Lele01g0712 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 152 - -
Lele01g0712 235 MobiDBLite consensus disorder prediction 126 146 - -
Lele01g0712 235 MobiDBLite consensus disorder prediction 107 125 - -
Lele01g0712 235 PIRSF PTI6 124 227 IPR017392 GO:0003700
Lele01g0712 235 PIRSF PTI6 2 91 IPR017392 GO:0003700
Lele01g0712 235 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Lele01g0712 235 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Lele01g0712 235 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Lele01g0712 235 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Lele01g0712 235 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Lele01g0712 235 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Lele01g0712 235 MobiDBLite consensus disorder prediction 104 146 - -
Lele01g0712 235 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0712 Lele-ChrLele01 4181654 4182361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0712 16 106 AP2-EREBP Transcription Factor Family AT1G74930 67.033 1.88e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele01g0712 AP2 4.6e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0712 01 4181654 4182361 Lele01g0712 01 4181654 4182361 ECH
Lele01g0712 01 4181654 4182361 Lele02g0697 02 4194751 4195467 ECH
Lele01g0712 01 4181654 4182361 Lele03g0709 03 4190694 4191404 hybridization
Lele01g0712 01 4181654 4182361 Lele04g0713 04 4334097 4334810 hybridization