Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0697 ATGACAGCACATATAATCAACAGAGTTCCTTCAAAGATTCTTTCATATGAGACATCATATGAGAGGATCTATAAGGAAAAACCAGATTATGACAATTTAAGAGTCTTTGGTTGTTTAGCCTATGCAACAAATTTGAGAGTTACAGATAAGTTTCTCCCTAGGACCATACCATGTATTTTCTTGGGATATCCGAGTAGTCAAAAGGGATTTATGTTACTTAATTTACAAACAAGGGAAATTTTTGTCAGTAGACATGTATCATTTTGTGAGGATCAATTTCCATTCAAGAAACTTGAGTGCACTAAGCAAGGGGGAGTGAACCAACCACAAATTGGAAACTCTTCCTTAGATCTTTTTAATTTTGACCCCATAGAAAATTTTGTGGATGGGTCACAACAGGGGACAAGACCTCATATTCAAACCAGTAACCCATTAATTACAGATATTGAGGACATTCATTCGAGCCAAGATGATATAAGTAATCAGGAAATGCAAACAGCAGGGCTACCCAATAATAGACCAGTTAGGGAAAGGAGACCACCTATATGGTCAAAGGATTATGTGTGTAATGTAATTGCTTCAACGAATCCAGTAGGCAATCAAAACAAGAATAAATGCTTATATCCCATTGAGAATTATATTTCTTATTCTAACATATCTGCTTCTTATATGTGTTATTTATGTGATATTGATTCTGCTATTGATCCCTCTAGTTATGGGGAGGCAATAAAGGACAGTAAGTGGATTGAAGCAATGGAACTTGAAATAAAGGCATTAGAAAGTAATGGAACTTGGGACATTGTCCCTCTCCCAAGGGGGAGGAAGGCTATAGGTTGTAAATGGGTGTTTAAAATCAAGTATAACTCAGAAGGAAAGATAGATAAATATAAGGCAAGATTGGTTGCTAAAGGGTATAGCCAAAAGGAAGGAATTGATTACCATGAAACATTTTCCCCTGTGGTTAAAATGACAACTATTAGGGGTGATCTTGATGAGAAAATATATCATGTTCTCAATCAGTACATGGCAAATCCCATGAAGATACATATGGCTGCAGCAATGAAGGTGGTCAGGTATCTGAAGGGAACTCCAGGGCTCGGTGTGCTGATCAGTGCTTCAGGAGGCCTGGAACTTGAGTGCTATTGTGATGCTGATTGGGTTGCATGTGGTGTGACAAGAAGGTCTGTAACTGGATACCTATTAAAGCTGGGAGGTTCACTCGTCAAGTGGAAGACCAAGAAGCAAAACACTGTGTCTCGTTCTTCTGCAGAAGCTAAATATAGAGCACTTGCAGCATTAGTTGCAGAAGTTGTGTGGCTTATAGGTATACTTAAAGAAATAGGAACAGAACATCCCAGACCAGTCAAGGTATACAGTGATAGCAAAGCAGCAATTCATATTGCGTCGAACCCAGTATTTCATGAGAGAACAAAACACATAGAAATTGATCTTCATTTTGTACGAGAAAAGCTTCAAGAAAAATTGATTAAGCTGATATATACAAGGTCTGAAGACCAAAAGGCGAATATATTGACCAAATCAGTGGGGAAAGATGTACAATCCAAGTTACTTTACAAGTTGGGTGCAATAGATATATTTAGCTCCCAACTTGAGGGAGAAAATTCTTATCCAAGTGAGCCCAAACTTACCATAAAAACCATGGATCTTTTTCTTCTCTACTTTTCATTCGCTGTCCAAGAAAATGACCCTTTTCACCTGTTGTGGCCAGCTTTGTCTGAGATTGCGGTTCTAGACTTAAACTACAAAGGACGAAGCAAAAGCCAACCTGGCCCTTATTTTATGGACTACTTGTTTCAAATAATCACGCTTCCTCCTCAACCACCCGTGCTCGACATTTCCTCGTTCAGCTCATACATTGCTCTCAGAGATCCTCCCATGGCTTCCAAGCTCTGTGACTCCTGCAAGTCCACCACCGCCACCCTCTTCTGCCGCGCCGACTCCGCCTTCCTCTGCCTCGGCTGTGACGCTAAGGTCCATGCTGCCAACAAGCTCGCTTCTCGCCACGCGCGTGTCTGGGTCTGCGAGGTCTGCGAGCAAGCCCCTGCTCACGTCACCTGCAAGGCTGATGCTGCTGCTCTCTGCATCACCTGCGACCGTGACATCCATTCTGCCAATCCACTCGCTCGCCGTCACGAGCGCGTCCCCGTAACTCCCTTTTATGATCCCGTCCACTCTGTTGGTGCCCCGTCCGGCGCTGCCATCAACTTCCTCAACGACCGTTACTTCTCCGACGCTGATGCTAATGCTGACGTCAGCAGGGAAGAGGCCGAAGCGGCTTCCTGGTTGCTGCCTAACCCTTCCAATCCGAAGGCCGTGGAGAGCCCAGATCTGAACTCCGGTGAGTACGTGTTTCCCGAAATGGAGCCATGCCTAGATCTGGATTTCGGGCCGGTGGATCCGAAGGCGGAAGCTCAGGAGCAGAACAGTTCCGGCAGCGACGGTGTTGTACCTGTACAGAGCAAGAGTGCACAGATTCCATCCCTCAACGACCACTACTATGACATGGAATTGACTGGGTCCAAGAATTTTAGCTATGGTTACAACGGCAGCCAGTGCCTGAGCCAGAGTGTGTCGTCGTCTTCCATGGAGGTCGGGGTGGTTCCAGATGGGAATGCTATATCGAACGGTTACAGCAAGACGGTGATGGGGAGTGAGAATCAGACGGTGCAGATGTCAGCCGCAGACAGGGAAGCGAGGGTATTGAGGTACAGGGAGAAGAGGAAGAACCGAAAGTTCCAGAAGACCATTCGGTACGCTTCCAGAAAAGCGTATGCAGAAACGAGACCCAGGATCAAAGGCAGATTCGCAAAACGATCGGAGGTGGACCGCTTCGGAGGATACGGCGTCGTACCAAGCTGCTGA 2883 0.4502 MTAHIINRVPSKILSYETSYERIYKEKPDYDNLRVFGCLAYATNLRVTDKFLPRTIPCIFLGYPSSQKGFMLLNLQTREIFVSRHVSFCEDQFPFKKLECTKQGGVNQPQIGNSSLDLFNFDPIENFVDGSQQGTRPHIQTSNPLITDIEDIHSSQDDISNQEMQTAGLPNNRPVRERRPPIWSKDYVCNVIASTNPVGNQNKNKCLYPIENYISYSNISASYMCYLCDIDSAIDPSSYGEAIKDSKWIEAMELEIKALESNGTWDIVPLPRGRKAIGCKWVFKIKYNSEGKIDKYKARLVAKGYSQKEGIDYHETFSPVVKMTTIRGDLDEKIYHVLNQYMANPMKIHMAAAMKVVRYLKGTPGLGVLISASGGLELECYCDADWVACGVTRRSVTGYLLKLGGSLVKWKTKKQNTVSRSSAEAKYRALAALVAEVVWLIGILKEIGTEHPRPVKVYSDSKAAIHIASNPVFHERTKHIEIDLHFVREKLQEKLIKLIYTRSEDQKANILTKSVGKDVQSKLLYKLGAIDIFSSQLEGENSYPSEPKLTIKTMDLFLLYFSFAVQENDPFHLLWPALSEIAVLDLNYKGRSKSQPGPYFMDYLFQIITLPPQPPVLDISSFSSYIALRDPPMASKLCDSCKSTTATLFCRADSAFLCLGCDAKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCITCDRDIHSANPLARRHERVPVTPFYDPVHSVGAPSGAAINFLNDRYFSDADANADVSREEAEAASWLLPNPSNPKAVESPDLNSGEYVFPEMEPCLDLDFGPVDPKAEAQEQNSSGSDGVVPVQSKSAQIPSLNDHYYDMELTGSKNFSYGYNGSQCLSQSVSSSSMEVGVVPDGNAISNGYSKTVMGSENQTVQMSAADREARVLRYREKRKNRKFQKTIRYASRKAYAETRPRIKGRFAKRSEVDRFGGYGVVPSC 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0697 960 CDD Bbox1_BBX-like 637 680 - -
Lele01g0697 960 MobiDBLite consensus disorder prediction 810 825 - -
Lele01g0697 960 Pfam CCT motif 903 945 IPR010402 GO:0005515
Lele01g0697 960 Pfam B-box zinc finger 678 723 IPR000315 GO:0008270
Lele01g0697 960 CDD RNase_HI_RT_Ty1 379 518 - -
Lele01g0697 960 ProSiteProfiles Zinc finger B-box type profile. 633 680 IPR000315 GO:0008270
Lele01g0697 960 ProSiteProfiles CCT domain profile. 903 945 IPR010402 GO:0005515
Lele01g0697 960 SMART bboxneu5 633 680 IPR000315 GO:0008270
Lele01g0697 960 SMART bboxneu5 681 723 IPR000315 GO:0008270
Lele01g0697 960 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 262 327 IPR013103 -
Lele01g0697 960 MobiDBLite consensus disorder prediction 803 825 - -
Lele01g0697 960 SUPERFAMILY DNA/RNA polymerases 262 486 IPR043502 -
Lele01g0697 960 ProSiteProfiles Zinc finger B-box type profile. 676 723 IPR000315 GO:0008270
Lele01g0697 960 CDD Bbox1_BBX-like 680 723 - -
Lele01g0697 960 PANTHER GAG-POL-RELATED RETROTRANSPOSON 336 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0697 Lele-ChrLele01 4098537 4105360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0697 633 959 C2C2-CO-like Transcription Factor Family AT5G24930 60.606 1.78e-131 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele01g0697 RVT_2 3e-19 CL0027
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0697 01 4098537 4105360 Lele01g0697 01 4098537 4105360 ECH
Lele01g0697 01 4098537 4105360 Lele03g0694 03 4109278 4110340 hybridization
Lele01g0697 01 4098537 4105360 Lele04g0699 04 4249275 4250337 hybridization