LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele01g0681	ATGAAACGTAATGACCCACAGCCACCGGCCGGCCGGTTAGTGAATCAAATGAATTCTGATATGGAATCAACATGCTTGGATACCTCTCTCAACCTCAACGTTGGCCCTCGAGAAACACAAGTTATCACGGCTGAGGATTTGGTGCAAGAGTTGCATCGTTTAAGCAGTGAGAATCAGAAGCTAACAGAGAGACTTACTCACATGCGTGAGAACTGCAATCTTTTGAAAAAGCAATTGAGCCAATTGATGAACAAGAACACTATCAATAATAGTCCTGAAAGGGATCCACCAACAACTAATCAATCAAAGAAGAGAAAGGCTGAGACTGATGCCTGCAAGGATAACATGATTAGTATTAGCGGCAACACCCAGTACAGCAACGTTACCGACGAAGATTCATCATTTAGAAGGCCAGCCGATAAGGTTTCCAGAGTTCTGGTGCGCACCCAAGCATCAGATACTGGCTTGTATGTGAGGGATGGATATCAATGGAGGAAATATGGTCAGAAGGTGACTCGAGATAACCCTTCTCCAAGAGCTTACTTCAGGTGCTCCTTTGCGCCAAGCTGCCCTGTGAAGAAGAAGGTGCAAAGAAGTGCAGAAGACCCGACAGTATTGGTGGCAACCTACGAAGGAGAGCACAACCATGGACGACATGGATCTGAATTACCATCACTAACCTCGAATAACCAGAGCCAAAGTGATTCGGGATTAATAATGGCTGAAAATGGTGGAAAGTCTATGCAGCTGTGTTTGGTTCAACAAATGGCCACTTCTTTGACCAGAGATCCCAACTTTACAGCAGCACTCGCCACCGCCATCTCCGGAGGAATTTTAAAGCTTGCTTCTAATTAA	855	0.4526	MKRNDPQPPAGRLVNQMNSDMESTCLDTSLNLNVGPRETQVITAEDLVQELHRLSSENQKLTERLTHMRENCNLLKKQLSQLMNKNTINNSPERDPPTTNQSKKRKAETDACKDNMISISGNTQYSNVTDEDSSFRRPADKVSRVLVRTQASDTGLYVRDGYQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPTVLVATYEGEHNHGRHGSELPSLTSNNQSQSDSGLIMAENGGKSMQLCLVQQMATSLTRDPNFTAALATAISGGILKLASN	284

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele01g0681	284	MobiDBLite	consensus disorder prediction	84	110	-	-
	Lele01g0681	284	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	43	232	IPR044810	GO:0003700
	Lele01g0681	284	Gene3D	WRKY domain	142	218	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele01g0681	284	ProSiteProfiles	WRKY domain profile.	160	219	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele01g0681	284	Coils	Coil	44	85	-	-
	Lele01g0681	284	SUPERFAMILY	WRKY DNA-binding domain	156	218	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lele01g0681	284	MobiDBLite	consensus disorder prediction	221	239	-	-
	Lele01g0681	284	SMART	WRKY_cls	158	218	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lele01g0681	284	MobiDBLite	consensus disorder prediction	214	239	-	-
	Lele01g0681	284	FunFam	WRKY transcription factor 40	143	220	-	-
	Lele01g0681	284	Pfam	WRKY DNA -binding domain	160	216	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele01g0681	Lele-ChrLele01	4007951	4010680	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele01g0681	23	280	WRKY Transcription Factor Family	AT1G80840	45.847	3.68e-70	217

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lele01g0681		WRKY	7.3e-24	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele28g0672	28	4312294	4320021	Lele01g0681	01	4007951	4010680	CCT
	Lele25g0682	25	4316513	4317644	Lele01g0681	01	4007951	4010680	CCT
	Lele26g0687	26	4397674	4398963	Lele01g0681	01	4007951	4010680	CCT
	Lele27g1409	27	20371672	20373155	Lele01g0681	01	4007951	4010680	CCT
	Lele01g0681	01	4007951	4010680	Lele03g0676	03	4005715	4013557	hybridization
	Lele01g0681	01	4007951	4010680	Lele04g0683	04	4160702	4162016	hybridization