Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0678 ATGGCAAAGTGTCACCGGAACAACGTCGGACCCTTGATTCTCGATCGCCACAATCCTAATACGAATGCAGCTGTCGGTGGCCACTTCCGCCTATGGAATGCGCTCTCGGCCTCCTCATTCCGTCGTATCATTTTTGACGCCGTGAGCTGCGGCGGCAGCTCCCGTTATCAACACTCCCACTGTGACGACTTCAGCTCCACCGCCTCAAACTCTGGAAACTCTAAGGAAAAGCACCGAGAACAGAGGCAGGGACCATCTGAGTCTAGGCGTAGCTCCAATGGGAGGTCCGAGAAACTATCGGATCTTCTGCTTACAGCGGCTTCCGAGAATCGTGCCGAAACGAAAAAGAAGGAAGAGGCGTTGGAAGAGCTTAAGCAAATTGTGCAGGAGTTGCAAGGAGAGGACTTGACGAAGCGGCAAGCGGCAGCATCAAATGTTAGATTGCTCGCCAAGGAAAACTTGCAAGTCAGAGGGACTCTGGCATTGCTCGGAGTCATTCCTCCTCTGGTTGGAATGCTTGACTTAGAAGACGCTAACTCTCAAATCGCTTCTCTGTATGCATTGCTCAATCTCGGGATCGGCAACGATGCAAATAAAGCAGCCATTGTCAAAGTTGGCGCTGTTCACAAGATGCTAAAGCTCATTGAATCTCCTACTGCTCTGGATTCATCAATCTCTGAAGCGATTGTTGCAAATTTCCTTAGCTTGAGTGCTTTAGATTCAAACAAACCAATTATTGGATCCTCTGGTGCAATCCCTTTCCTGGTTAGAGCCCTTAAAAATTTAGATAACACATGTAGCCCTCAAGCTAAGCAAGATGCTCTGCGAGCACTGTACAATCTTTCAATCCTCCCAACCAATATATCACTCATTTTGGAAACCGATTTGGCTCCACATCTGATAAACACAATAGGAGACATGGAGGTGAGTGAAAGAGTCCTTCCCATTTTGAGCAATCTGGCATCAACACCAGAAGGCCGAAAAGCTATCAGTGCTGTGCCAGACGCATTCCCAATTCTGGTTGATGTATTAAACTGGACAGATTCACCAGGATGCCAAGAGAAGGCATCCTACATTTTGATGATTATGGCACACAAAGCTTATTATGGTGACAGGCAAGCCATGATTGAAGCTGGGATTGTATCATCATTGCTTGAGCTGACACTTCTGGGCACCCCATTGGCACAAAAACGAGCCTCAAGGATATTGCAGTTTCTGAGAGTAGACAAAGGCAAGCAGGTTTCTGGGAGTTGCAGTGGAAACTTGCATGCAAATGTCTCTGCTCCTATGTTTGGTGGCTCTTCGTCATCTTGTACAAAGCCACATGGAGGTGGGAGAAGGTCTGTGGAGGGAGCGGAAGATATGATGAGCGAGGAGAAGAAAGCAGTGAAGCAATTGGTTCGACAGAGTTTGCATAATAACATGAAGAAAATTGTGAAGAGGGCTAACATCCATCAGCAGTTCGTTCCATCAGAACATTTCAAGTCACTCACTTCAAGTTCGACTTCAAAGAGCCTGCCAGAGTCATCAATTATTATTGGAGGTAATGCTTTTCCTAGTTGGTTGGCTGAAAAGGGAAAGTTGACAAATTGTTTCACAGACAAGACAAGGACATCATATGAGATCCACAAAATAGCTGTCAAGGTTACTGCAGTTACCTTTAATTCAATGCCTTCAACTGTAAAATGTCTTGTGGGGGCTACATGGTTCCATTTTTGCTTTTCAGGACTAAAGGGGGAGAGTGAGCGGAGACCGGTGGAGGGCCGTCGAAGATCCAGCGAAACAGAACCACGTTCAGTACCGATGGCATCTGCGGACAACGAGCTCGAAGAGCAGCTCCTTGAAGCTGGAAATAAGCTTGTAGATCCTCCGTCTTCTGTCGACGAGCTCCTGTCCCTTCTTGATCAAATTGAGAGTTACCTATCAAGGGTTGAACAGTCTCCAACAAAATCTATGCAAAACGCACTCTCACCATCACTGAAGGCATTCATTGCTGATGAACTTTTGAGGCATTCAGATGATGATGTGAAAGTTGCGGTATCCTCTTGCATCAGCGAAATAACAAGGATAACTGCACCTGATGCTCCGTATGACGATGATCCAATGAAGGAGGTGTTTCAATTAATTGTATCTTCATTTGAAAATCTATATGATACGTCAAGCCGATCATATGCTAAGAGAACATCCATTATTGAAACTGTTGCAAAGGTCAGATCGTGTGTGGTAATGCTAGATCTTGAGTGTGACGGGCTGATTGTAGAGATGTTTCAGCATTTCTTTAAGGCTGTTAGGGTACATCATCCAGAAAATGTTTTATCATCCATTGAGACTATTATGATCCTTGTCATAGAAGAAAGTGAAGAGATATCTATGGACCTGCTTTCTCCAATCTTAGCCAATTTGAAGAAAGACAATGAGGAATTTTCACCAAATGCTCAAAATTTGGGGGAGAGGGTCCTGGAATGTTGTGCAACAAAGCTTAAACCATACTTAGTGCAAGCAGTGACCACCTTGGGCATTTCTTTAGATGATTATAGTAAGATACTTGCTTCTATATGTCAAGAAACATCTGGAAGCTTGGAGCAAAATGATGCATGTGCTTCCAGTGAAAATGCGGAAGACGAGGGAAAGTCAGCAAAAGCAACGTTGAATGAGTCAACACAGGTGATTGAAGAGGATGCTGAAAAAGCTACCCCTCCTCAACAAGTCACTTTTGTTGATGGCAGGTCTTCTAAGTCTGTCACGAGCAATGGCATTGTACGGTTCAGTGAAGGTGACTTGTTGGAAGATCCAAAGTCCTTAAAGAAGCAAGATGATGTAAATAATTCTGATCACTATACAGGTGTGAATATATCCAGTAATGAGGATCCCGGTAGTGTCAGCACTAAAAAAGTTGACAACACAGAACAAAAGCCAGAACAAACCACCAAGAGGAGAGGAAAACAATATCATTCTACTAAATCGGCAGAACCTTCTGAGGGTTCAGCTGTTGCTCATGGCAGGGATGCTGAGAAAATGCTTGACTCTAAAAGTAACAAGGACCTTTGTAGTTCACTACATGAAAACCATTCTACTGAGGTAGCAGGACCTTCAGAGAATGACAAGGAGAGTCATGCTAAGACTTCATCAGGAAAGGTAGGAATAAATGAGTCTGAAGATGCGGCTTCTCCTCCCAGTGAAAGCCATCCTGATGAAATTCGTTACAAAAAAACTGGAAGACCAAATAAGAAAGGAAGGCCTGTCAAAGAAGTGGCAATCTCCTCTGAGGATGTTACCAAAAAGATGTCAGAAGTAACAAGTGATTCAGATGCAAAACCTGTCAATCGGTCTGCCAAGAAGGCACCTGGTGAGAGCTCTGATGGGAAAAAAGCTAATGCGGTAGATTCAGTTGAAAAAACAAGTGGGAGTATAAGTGATCCAGAGAGCAAAAGGCGGTCAGCTAAGAAAGAAGATGGGACCAATAAGGGTGCTGGATCCTCTTTGAAGCACCTGAAGGAAAATAAAAGGCAGAAGCAGGGCAAAGTCTCGGATTTGGATGTAGCAAAATCTGCTAAAGATGAAAAAAAGGAAACAGTATCTTCACCAAAGTCAGGTACGAGATTGACTAAAGATGAACAATGTTTAGGGGAAACGCCCAAGACCAATTTGAAGAGGAAACCTACTTCAGGTCCAGGAAAAGAAAATAAGTCTGATATCAAGGTATATGGTGAAAATCTTGTTGGTTCACGGGTTAAAGTTTGGTGGCCAGAAGATCGTGAGTTTTACAATGGTACCATTGAGTCCTTTGATTCTTCCAAAAAGAAGCACAAGGTTGCATATGATGATGGTGATATAGAAATATTAAGTCTTAGAAAGGAAAAATGGGAGCTTGTTCAGGAAGGAGATGATCATGCAAGCCCTGATGTTTCAGCCGATATGCCCTCAAATAAGAAAAGGAAAAGAAGTGCTGTTCAGTCAACTAAGGGAAGAAACACGGATACCCCTACCAAGAGTGGAGGAGCCGCGTCCAGCAAATCGAAGGATGCACCCACGAAGTCTGGCCATAAGACGAAAGATGGCGGCAAAGTTGATAGCAAATCCAAAGATTCCAAGACTATTGGCAAATCGGAGGATGGGATTAGTAGAAAATCAAAGGATCGTGCTTCGAAAAGTGGTTTCAATAAATCTGCTGATGCTGCACCAGTAATGACTGAATCCGATGATGATGACATTGATACTCCCAAGACCAACAAATCAAAGAACGATGATATTAGCAAACCAAACTTTTCTTCCAAGACCAAGCAAGAAACCTCTAAAAAGCCCAAGAAAGAAACATCAAGTACTCCTGCTTCTAAGGGTAGATCCCCCAAAAGTGATGGAAAGTCTAATGTTAATGCCTCTGGCAAGGTCAAATCTGGTTCTTCATCAAAGACAAAAGATGCTAAGAATGAGTTATCGGGAGATTCAACAGAAAAGGCAAAAGACGCGAAGGGTAAGTCATCCAAGGCGCAAGGAAGTTCTGCTGCCAAGGCTGGAAAGAAGCGTCAAAGAGGCTAG 4536 0.4378 MAKCHRNNVGPLILDRHNPNTNAAVGGHFRLWNALSASSFRRIIFDAVSCGGSSRYQHSHCDDFSSTASNSGNSKEKHREQRQGPSESRRSSNGRSEKLSDLLLTAASENRAETKKKEEALEELKQIVQELQGEDLTKRQAAASNVRLLAKENLQVRGTLALLGVIPPLVGMLDLEDANSQIASLYALLNLGIGNDANKAAIVKVGAVHKMLKLIESPTALDSSISEAIVANFLSLSALDSNKPIIGSSGAIPFLVRALKNLDNTCSPQAKQDALRALYNLSILPTNISLILETDLAPHLINTIGDMEVSERVLPILSNLASTPEGRKAISAVPDAFPILVDVLNWTDSPGCQEKASYILMIMAHKAYYGDRQAMIEAGIVSSLLELTLLGTPLAQKRASRILQFLRVDKGKQVSGSCSGNLHANVSAPMFGGSSSSCTKPHGGGRRSVEGAEDMMSEEKKAVKQLVRQSLHNNMKKIVKRANIHQQFVPSEHFKSLTSSSTSKSLPESSIIIGGNAFPSWLAEKGKLTNCFTDKTRTSYEIHKIAVKVTAVTFNSMPSTVKCLVGATWFHFCFSGLKGESERRPVEGRRRSSETEPRSVPMASADNELEEQLLEAGNKLVDPPSSVDELLSLLDQIESYLSRVEQSPTKSMQNALSPSLKAFIADELLRHSDDDVKVAVSSCISEITRITAPDAPYDDDPMKEVFQLIVSSFENLYDTSSRSYAKRTSIIETVAKVRSCVVMLDLECDGLIVEMFQHFFKAVRVHHPENVLSSIETIMILVIEESEEISMDLLSPILANLKKDNEEFSPNAQNLGERVLECCATKLKPYLVQAVTTLGISLDDYSKILASICQETSGSLEQNDACASSENAEDEGKSAKATLNESTQVIEEDAEKATPPQQVTFVDGRSSKSVTSNGIVRFSEGDLLEDPKSLKKQDDVNNSDHYTGVNISSNEDPGSVSTKKVDNTEQKPEQTTKRRGKQYHSTKSAEPSEGSAVAHGRDAEKMLDSKSNKDLCSSLHENHSTEVAGPSENDKESHAKTSSGKVGINESEDAASPPSESHPDEIRYKKTGRPNKKGRPVKEVAISSEDVTKKMSEVTSDSDAKPVNRSAKKAPGESSDGKKANAVDSVEKTSGSISDPESKRRSAKKEDGTNKGAGSSLKHLKENKRQKQGKVSDLDVAKSAKDEKKETVSSPKSGTRLTKDEQCLGETPKTNLKRKPTSGPGKENKSDIKVYGENLVGSRVKVWWPEDREFYNGTIESFDSSKKKHKVAYDDGDIEILSLRKEKWELVQEGDDHASPDVSADMPSNKKRKRSAVQSTKGRNTDTPTKSGGAASSKSKDAPTKSGHKTKDGGKVDSKSKDSKTIGKSEDGISRKSKDRASKSGFNKSADAAPVMTESDDDDIDTPKTNKSKNDDISKPNFSSKTKQETSKKPKKETSSTPASKGRSPKSDGKSNVNASGKVKSGSSSKTKDAKNELSGDSTEKAKDAKGKSSKAQGSSAAKAGKKRQRG 1511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0678 1511 MobiDBLite consensus disorder prediction 1057 1127 - -
Lele01g0678 1511 SMART TUDOR_7 1236 1298 IPR002999 -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 1291 1312 - -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 1401 1440 - -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 1468 1492 - -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 860 910 - -
Lele01g0678 1511 SUPERFAMILY ARM repeat 123 409 IPR016024 -
Lele01g0678 1511 Coils Coil 449 469 - -
Lele01g0678 1511 Coils Coil 104 137 - -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 583 605 - -
Lele01g0678 1511 Pfam Sister chromatid cohesion protein PDS5 protein 628 833 - -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 73 96 - -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 59 98 - -
Lele01g0678 1511 Gene3D - 1237 1287 - -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 1291 1511 - -
Lele01g0678 1511 FunFam Binding protein 1235 1287 - -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 997 1020 - -
Lele01g0678 1511 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 24 507 - -
Lele01g0678 1511 Gene3D - 104 262 IPR011989 -
Lele01g0678 1511 SUPERFAMILY ARM repeat 667 839 IPR016024 -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 1342 1385 - -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 1027 1041 - -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 966 986 - -
Lele01g0678 1511 CDD TUDOR 1241 1283 IPR002999 -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 1441 1467 - -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 1137 1194 - -
Lele01g0678 1511 SUPERFAMILY Tudor/PWWP/MBT 1238 1277 - -
Lele01g0678 1511 Gene3D - 263 419 IPR011989 -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 1320 1341 - -
Lele01g0678 1511 SMART arm_5 239 283 IPR000225 GO:0005515
Lele01g0678 1511 SMART arm_5 195 238 IPR000225 GO:0005515
Lele01g0678 1511 SMART arm_5 153 193 IPR000225 GO:0005515
Lele01g0678 1511 SMART arm_5 284 322 IPR000225 GO:0005515
Lele01g0678 1511 MobiDBLite consensus disorder prediction 930 1232 - -
Lele01g0678 1511 MobiDBLite consensus disorder prediction 943 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0678 Lele-ChrLele01 3963595 3976892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0678 96 407 U-box Gene Family AT2G23140 32.803 3.72e-34 139
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0678 01 3963595 3976892 Lele03g0674 03 3970854 3981883 hybridization
Lele01g0678 01 3963595 3976892 Lele04g0678 04 4120757 4134574 hybridization