Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0676 ATGACAAGCCTGCATCAGGCTGCCGGAGGCAGTTCGAGATCTGGGTTTGGGTGCATTTTCCGCTCTGGTATTTGTACTTGTGTATCGGAAATGTCAATACTGCAGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAAGGACAATCTTGAAGAAGAGTTTGCATTGATCCGTGAAATTGTCGACGAATATAATTACATCGCCATGGACACGGAATTCCCCGGAGTGGTTCTTCGCCCGGTGGGTAATTTTAAAAACATCAATGAATATAACTACCAAACACTGAAGGACAACGTTGATATGTTGAAGTTGATCCAATTGGGACTAACCTTCTCCGATGAGCATGGAAATCTTCCTACTTGCGGCACTGACAAATGTTGGATTTGGCAATTTAACTTCCGCGAGTTTAACGTTAGCGAAGACATCTTTGCGAGTGATTCAATTCAACTACTGCGCCAATGTGGAATTGATTTTAAGAAGAACAACGAGAAGGGCATTGACGTGAACCGATTTGGGGAGCTTCTTATGTCTTCAGGGGTGGTGTTGAACAATGAAGTCCATTGGGTCACATTTCATAGCGGGTATGATTTTGGTTACCTCCTTAAGTTATTGACGTGCCGTAGCTTGCCTGATACACAGTCGGGATTCTTTACTTTGATCAACGTGTACTTCCCTACGGTGTATGATATCAAGCATCTGATGAAGTTCTGCAACAACCTCCATGGTGGATTGAACAAACTTGCAGAATTGTTGGAAGTTGAGAGGATTGGTGCTTGCCATCAAGCCGGGTCCGATAGCTTACTAACATCTTGTACATTTAGAAAGTTAAGGGATGTGTTCTTCAATGGTTCCACAGAGAAGTATTCAGGTGTCTTGTACGGGTTAGGTAAAGAAAATTGTTGTCAAGCTTGTGGAGAAAATGGAGATCTTTTGAACTGTGAAACATGCACTTATGCCTATCATCCTAGGCGTTTACTTCCACCACTTAGAGCTCCTGTTCCAGGCAACTGGGGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGACTGGGAGATGCGACCTACTGTAGCTGACGTCAGTGATACCACAAAACTGGGGTCAAAACAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGCAACTATCATATCTCCACTGCACATGGGGTGATGATGATAAGGAATATCCTGTGAAATGGAGAGAGCTTTCATATGATGGATGCTATTGGGAGTTCGAGTCTGATATTTCCGAGTTTCAGGCAGAAATTGAAAGATTCAACAGATTTCAGTCGAGGTCTAGGAAACTTGTTATTTCGGATACGCAGAAAGACAGCGTTAAGGATGGAGCCGAATTGATGAGGCATCAGAAAGAATTTCATCAGTATGAACATAGCCCTGAATTTCTTTTAGGGGGGACACTACATCCATATCAGCTTGAAGGTCTAAACTTTTTACGTGTCTCATGGTCTAAGCAAACTCATGTTATGTATGTTGGATCTTCTCAAGCCCGTGCTGTTATACGTGAGTATGAATTTTACTTTCCCAAGAACCAGAAGAAGTTAAAGAAAAATAAATCTGGTCAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGATGTCCTCTTGACATCATATGATATTATCAACCTTGACACAGCTTCATTGAAACCTATAAAGTGGGAGTGCATGATAGTTGACGAAGGCCACCATCTCAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGCAGACATCGTGTGCTTTTGACTGGGACTCCTCTGCAGAATAACTTGGATGAACTTTTTATGCTTATGCGCTTCCTTGACGCTGGGAAGATTTCTCTCATCAATGTTGTTATGGAGTTGCGAAAGCTCTGTTGTCATCCTTACATGTTAGAAGGAGTTGAGCCAGATATTCAAGACGCAAAAGAATCTTACAAAAAGCTGCTGGAATCATCGGGGAAGTTGCAATTGTTAGACAAAATGACGTTGAAGCTTAAAGAGCAAGGGCATAGAGTCCTCATATATTCACAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTTCTTACAAGAATTGGCAGTATGAAGGGATTGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTGAGAGAGAACAGACATGGTAACGGCGTGTCAACTTACAAAAGAAAACATCACGGCCCGGTCGAAGAGAAGGAAACACCAAGTTTTCTAGAAACACGGGGACGTGATGTGGAAATGGTTGAAGCTGAGAATGATGCTGAACTGAATGAAAAGAAAGAAAAATCTGACGCAGAGGCCATCATGTTGAAATTTGAATTTAGTGTGACAACGGCTATGAGAACTTTCCTGGCTCCTGGCTCCTGGCTCCTGGCTGCCAAGGGCAAGAGCACGAAAGCATGA 2442 0.4193 MTSLHQAAGGSSRSGFGCIFRSGICTCVSEMSILQKGDSVQIREVWKDNLEEEFALIREIVDEYNYIAMDTEFPGVVLRPVGNFKNINEYNYQTLKDNVDMLKLIQLGLTFSDEHGNLPTCGTDKCWIWQFNFREFNVSEDIFASDSIQLLRQCGIDFKKNNEKGIDVNRFGELLMSSGVVLNNEVHWVTFHSGYDFGYLLKLLTCRSLPDTQSGFFTLINVYFPTVYDIKHLMKFCNNLHGGLNKLAELLEVERIGACHQAGSDSLLTSCTFRKLRDVFFNGSTEKYSGVLYGLGKENCCQACGENGDLLNCETCTYAYHPRRLLPPLRAPVPGNWGCPECVSPLNDIDKILDWEMRPTVADVSDTTKLGSKQIFVKQYLVKWKQLSYLHCTWGDDDKEYPVKWRELSYDGCYWEFESDISEFQAEIERFNRFQSRSRKLVISDTQKDSVKDGAELMRHQKEFHQYEHSPEFLLGGTLHPYQLEGLNFLRVSWSKQTHVMYVGSSQARAVIREYEFYFPKNQKKLKKNKSGQIVSESKQDRIKFDVLLTSYDIINLDTASLKPIKWECMIVDEGHHLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMRFLDAGKISLINVVMELRKLCCHPYMLEGVEPDIQDAKESYKKLLESSGKLQLLDKMTLKLKEQGHRVLIYSQFQHMLDLLEDYCSYKNWQYEGIDGKVGGAERQVRENRHGNGVSTYKRKHHGPVEEKETPSFLETRGRDVEMVEAENDAELNEKKEKSDAEAIMLKFEFSVTTAMRTFLAPGSWLLAAKGKSTKA 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0676 813 CDD SF2_C_SNF 664 726 - -
Lele01g0676 813 Pfam CAF1 family ribonuclease 45 166 IPR006941 -
Lele01g0676 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 646 IPR027417 -
Lele01g0676 813 SUPERFAMILY Chromo domain-like 313 395 IPR016197 -
Lele01g0676 813 Gene3D - 397 433 - -
Lele01g0676 813 MobiDBLite consensus disorder prediction 729 748 - -
Lele01g0676 813 Gene3D - 624 723 IPR027417 -
Lele01g0676 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 723 IPR027417 -
Lele01g0676 813 Pfam SNF2-related domain 527 622 IPR000330 GO:0005524|GO:0140658
Lele01g0676 813 Gene3D - 28 296 IPR036397 GO:0003676
Lele01g0676 813 CDD CD1_tandem 345 394 - -
Lele01g0676 813 SMART PHD_3 300 343 IPR001965 -
Lele01g0676 813 Pfam Chromo (CHRromatin Organisation MOdifier) domain 397 433 IPR023780 -
Lele01g0676 813 SUPERFAMILY Chromo domain-like 396 436 IPR016197 -
Lele01g0676 813 FunFam Putative CCR4-associated factor 1 7 32 299 - -
Lele01g0676 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 343 IPR013083 -
Lele01g0676 813 Gene3D - 344 396 - -
Lele01g0676 813 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 398 499 - -
Lele01g0676 813 Gene3D - 494 622 IPR038718 -
Lele01g0676 813 SUPERFAMILY Ribonuclease H-like 42 295 IPR012337 -
Lele01g0676 813 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 496 622 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0676 Lele-ChrLele01 3941014 3952215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0676 546 619 RAD5 or RAD16-like Gene Family AT5G22750 32.927 8.67e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele01g0676 SNF2_N 8e-23 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0676 01 3941014 3952215 Lele03g0671 03 3949320 3959045 hybridization
Lele01g0676 01 3941014 3952215 Lele04g0676 04 4106930 4107751 hybridization