Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0671 ATGTTATGTTTTTCGCGTCTGGACCCACTTCACGCGTATGTATTCGTGGGAATTGAGAAAAAGAAGTTGCTGCTGCTAACGTCACAGGCATCAATTTTGGCTGATGATAATACTGGAGATGATTTGATCTAAGCTTCAATTATAGGGTTTGCATTCTTTGGCTGCAAATGCATGGCAAGACCACAACAGCGATATCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTATTGAAGACGAGGATATGGCTTGGTACATTTGAAACAGCAGAAGATGCAGCCAGAGCGTATGATGAAGCAGCGAGGCTGATGTGTGGAACGAGAGCAAGAACCAATTTCCCTTACAACCCCAATGCGTCTCAATCATCATCTTCTAAGCTTCTCTCTGCAACTCTGACTGCTAAACTGCATAGATGTTATATGGCTTCGCTTCAAATGACGAGGCCTACAGTATCGGAACCTGTGCGAGTAACTTCGCCGAATGTTGTGTCCACGAGCACAAGCAACTCGTCCACTGTGAAAAGCAGAGAAACCAGTATTACAATGTTGGGAGGTAAGAGAGCAAAGGCGGAGGAGGCTGACGAATCAGAGGCAAAATGGGGTGTGAAGAAGGTGAAGGTGGAAAGTGATGAGCTCTTCAAGCCACTTGAAGAGGATCATATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGGTCTATTGAGCTCTGCTCTGTCATGCCTCCTCAGTAA 753 0.4622 MLCFSRLDPLHAYVFVGIEKKKLLLLTSQASILADDNTGDDLIXASIIGFAFFGCKCMARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPTVSEPVRVTSPNVVSTSTSNSSTVKSRETSITMLGGKRAKAEEADESEAKWGVKKVKVESDELFKPLEEDHIEQMIEELLDYGSIELCSVMPPQ 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0671 250 CDD AP2 63 123 IPR001471 GO:0003700|GO:0006355
Lele01g0671 250 Pfam AP2 domain 64 113 IPR001471 GO:0003700|GO:0006355
Lele01g0671 250 Gene3D AP2/ERF domain 63 122 IPR036955 GO:0003700|GO:0006355
Lele01g0671 250 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Lele01g0671 250 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 62 197 - -
Lele01g0671 250 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Lele01g0671 250 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Lele01g0671 250 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Lele01g0671 250 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Lele01g0671 250 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0671 Lele-ChrLele01 3900297 3902967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0671 58 250 AP2-EREBP Transcription Factor Family AT5G25190 66.321 1.21e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele01g0671 AP2 1.7e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0663 25 4168417 4169067 Lele01g0671 01 3900297 3902967 CCT
Lele26g0672 26 4273050 4273694 Lele01g0671 01 3900297 3902967 CCT
Lele27g1424 27 20507647 20508298 Lele01g0671 01 3900297 3902967 CCT
Lele01g0671 01 3900297 3902967 Lele01g0671 01 3900297 3902967 ECH
Lele01g0671 01 3900297 3902967 Lele03g0667 03 3909898 3912621 hybridization