Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0665 ATGGCCTCCCATAATCAACAACACCTATCACCCCACGATTTCTCCGACTCCAATCAACCCAATTGCCTCACCCACCCCCTCCTCCATTCCAACTATTCCCACCACTCTCACATTCACAACAATTCCTCCGACGTTCCCAACAATATCGACGCCAACAATTTCCTCCACCTCTACGCTACGGCCCCCTCTGACTCTACCGCAGCTGCTGCCCTCCGCCCTGACCACACTCACGTCATTGACGACGTCGCTGCCTTGTCCCACGAGTCCGCTGATTTGAATATGGCTTCCGGCGACAACCCCAATGCCAAGAGCGAGGTGGTTGTGGAGGACGGGGAGGTGAGGTTGGCCAAGTGGGAGAATGCGAGGTCCAAGGCGGAGATTCTAGCGCATCCTCTGTACGAACAGCTGCTGTCAGCGCACGTGGCGTGTTTGCGGATCGCCACGCCGGTTGACCAGTTGCCCAGGATTGACGCTCAACTAGCGCAGTCCGAGAATGTGGTGGCCAAATACTCAGCTTTGGGACATGGAGCACACAGCTTGGTTGGGGATGAGAAGGGACTCGATCAATTCATGTCGCATTATGTTCTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTCCGGGTTCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATAGAACAATCCTTACAAAGTCTAACAGGAGTTTCACCAGGAGAAGGTACAGGGGCTACCATGTCTGATGACGAAGAAGACCACATAAACAGTGATGGCAATCTTTTCGATGGTACTTTGGATGGTTCAGACAGCATGGGATTTGGCCCTCTTGTTCCAACAGAGAATGAGAGATCCCTCATGGAGCGAGTTCGGCAAGAGTTGAGACATGAACTTAAACAGGGCTATAAGGATAAAATTGTGGACATGAGAGAAGAAATTTTGCGCAAGAGACGAGCTGGTAAACTTCCCGGTGATACCACCTCTGTCCTTAAAGCTTGGTGGCAAGCCCATTCCAAGTGGCCTTACCCTACTGAGGAAGATAAGGCAAAGTTGGTGCAGGAAACTGGTTTGCAATTAAAGCAGATTAACAATTGGTTCATTAATCAAAGGAAGAGGAACTGGCACAGCAATGCTTTAACTTCTACTGTTCCGAAGAGCAAGAGGAAAAGGTGA 1161 0.503 MASHNQQHLSPHDFSDSNQPNCLTHPLLHSNYSHHSHIHNNSSDVPNNIDANNFLHLYATAPSDSTAAAALRPDHTHVIDDVAALSHESADLNMASGDNPNAKSEVVVEDGEVRLAKWENARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSENVVAKYSALGHGAHSLVGDEKGLDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEEDHINSDGNLFDGTLDGSDSMGFGPLVPTENERSLMERVRQELRHELKQGYKDKIVDMREEILRKRRAGKLPGDTTSVLKAWWQAHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHSNALTSTVPKSKRKR 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0665 386 SUPERFAMILY Homeodomain-like 311 374 IPR009057 -
Lele01g0665 386 Gene3D - 308 380 - -
Lele01g0665 386 SMART KNOX2_2 177 232 IPR005541 GO:0003677|GO:0005634
Lele01g0665 386 ProSiteProfiles 'Homeobox' domain profile. 309 372 IPR001356 GO:0003677
Lele01g0665 386 Pfam KNOX2 domain 181 231 IPR005541 GO:0003677|GO:0005634
Lele01g0665 386 SMART HOX_1 311 376 IPR001356 GO:0003677
Lele01g0665 386 MobiDBLite consensus disorder prediction 1 27 - -
Lele01g0665 386 MobiDBLite consensus disorder prediction 231 254 - -
Lele01g0665 386 Pfam Homeobox KN domain 329 368 IPR008422 GO:0003677|GO:0006355
Lele01g0665 386 Pfam KNOX1 domain 124 164 IPR005540 GO:0003677|GO:0005634
Lele01g0665 386 SMART ELK_2 289 310 IPR005539 GO:0003677
Lele01g0665 386 FunFam homeobox protein knotted-1-like 3 isoform X1 310 371 - -
Lele01g0665 386 SMART KNOX1_2 121 165 IPR005540 GO:0003677|GO:0005634
Lele01g0665 386 ProSiteProfiles ELK domain profile. 289 309 IPR005539 GO:0003677
Lele01g0665 386 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 115 371 - -
Lele01g0665 386 CDD homeodomain 312 373 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0665 Lele-ChrLele01 3871208 3874021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0665 79 386 Homeobox Transcription Factor Family AT5G25220 78.065 8.53e-177 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele01g0665 KNOX2 2e-19 No_clan