Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0657 ATGGGGAAGCCGCTCGCCGGGAAGAAGAAGGATCTCTCAGATCGCAAGGCTACAAATGCAACCGGCAGGAGCAGCAGGCTTTCTGAGAGAACCACCAAAGCAATTGTTGATGAAGACACGACCATGTTCATCAACATGTCTCATGAGCTCAAGGAAGAAGGTAACAAACTCTCTCAAAAGAAGGATCACGAAGGCGCTATATTGAAGTATGAGAAGGCCCTCAAGCTCCTTCCGAAAAACCACATAGAAATTGCACTCCTACGAAACAGTATGGCTTGGTGTTATATGCAAATGGGTCTTGGCGAATACCCAAAAGCAATCAATGAATGTAACTTAGCCCTAGAAGTATCACCCAGATACAGCAAGGCTCTGGTGAGACGAGCAAAGTGCTATGAAGAATTGAACCGTTTGGATTTGGCTTTGAGAGATGTTCATAATGTTTTGAGTTGGGAACCCAATAACCTTCATGCATTTGAGATCCTGGAGAGTTTGAAAACGATCATGGAGGAGAAGGGCATCACCATTGATGAACAAAAGATTGGTTTGCTTAGTCCCGGTGCTCGCTTGCGTAACGTGGTCAGAGAGAAACTAAAGAAGAAGAAAGGCAAAAAGAGAGAGACAGACAAGGCAGAGGATAAGGTTGTTGTTGAGGAGAATCTGAAGGCTGTAAAAACTGAACAAGTGGTGACAAAAACAATTGATCAGGAAAAACTGATCGTGGAACCTGTTAAGGAAGAAACAAAGGTAACGAGGACGGCCAAGTTGGTCTTTGGAGAGGATATAAGGTGGGCACAGTTACCTGTGAATTGTAGTCTGAAATTGGTAAGAGATATTATTAGGGATCGTTTCCCAGGCTTGAAAGGTGTTCTTGTGAAATATAAAGATCCAGATGGTGACTTGGTCACAATCACCACCAATGAGGAACTAAGGTTAGCTGAATCTTCAGGTAACGTGCTGGGCTCGGTTCGACTCCATATCAGAGAAGTTGATCCAAGCCAGGAACCATCTTATGAAGAAATAACCAGTGAACAAAAACAAGTGCGAACGGATGATGACGCTATCAAGCAAAATGGTCCTACGGAAGAAAGGAAAGATATTGCAAGAAAAAGGACGACCACTGTGGAGGAGTGGATTGTTCAATTTGCAAGGCTGTTTAAGAACCATGTTGGGTTTGACTCTGATGTATATTTGGATCTTCATGAGATAGGAATGACGCTGTATACAGAAGCAATGGAGGACACAGTAACAAGCGATGAAGCTCAAGAACTTTTTGATATTTCTGTAGATAAATTTCAGGAGATGGCAGCTTTAGCAATGTTTAACTGGGGGAATGTTCACATGTCCAAGGCGAGGAAGCGACCTTCCATTTCAGACGACGCGTCAAGAGAATCTTCTTTGGAGAATATTAAAGTTGCATACGTGTGGGCACAGAAGCAGTACAAGCTAGCAGAAACGAGATACGAAGAAGCAGTGAAAATCAAGCCAGACTTCTACGAAGGTTTTCTCGCTTTAGGGCATCAACAATTTGAACAGGCAAAGCTGTGCTGGTTCTATGCAATCGCAAGCAAGGAGGATCTTGAATCAGGGTCTTCTTCTGATGACGTTTTACAACTCTATAACAAAGCAGAGGACAGCATGGAGAAAGGCATGTTGATGTGGGAGGAGATGGAGGAACAACGCTTGAATGGATTGTCCAAATCAGAAAAATACAAAGCTCAGTTGGAGAAAATGGGTTTGGATAGCATTTTCAAGGATGTTTCTTTTGCTGAAGCTACAGAGCACGTTGACAACATGAGATCGCAGATAAACCTTTTATGGGGTACTCTGTTGTATGAACGTTCTGTTGTAGAATACAAGTTAGGCCTACCAACATGGGAGGAATGTTTGGAGGTTTCAGTTGAAAAGTTTGAACTCGCTGGAGCATCTCAAACTGATATTGCTGTCATGATCAAAAATCATTGTTCCAATGTAACAGCACTTGAAGGTTGGGGGTTCAAAATTGATGAGATAGTGCAGGCGTGGAATGAGATGTACGATGCCCAGAGGTGGCAATTTGGAGTTCCATCGTTTCGACTTGAACCGTTGTTTCGTCGGCGAGCCCCGAAACTTCATTACATAAGATCCTCCAAACAAGATTCGGTGCCATCTTTGTCTAGCTCATTCAATGATGGGATTGGATTTTTTGCCCATTGCTGCTTGTTTCATTGTGTTAATGGCATGTTGCAGATCATGCTTTCTGGTTCAAGACATGTTCCACTCAACTTATTTTTGGTGTCTTCCAATTTCAGGGTTGCAATTTTCCGCCTTAGAATCCGAGCTTTGCACCGTCTGGGAGGGAGACCTTGGAGGGACTCAATTATTAGGCCCTTTAGGGTTTTTTCGCTTCTCTCAAATTTCTTTCCTAAACTCAAATCTCCAATCATGGAGAAGGTCAGGAGAGCGTCTCATGCCGGTTCTTGGTACACTGATAATCCTAAGCAGCTATCGGATGAGCTCGATGGATGGCTGAGATCATCTGGCCTGACCAAGTCTCCTGATGTACGAGGAGTGATAGCACCACATGCAGGGTATTCTTATTCGGGACGAGCTGCTGCTTATGCCTTTGGAAACATAGATCCATCTAACATCATTCGGGTGTTCCTTCTTGGTCCTTCTCACCACTATTACACTCCAAAATGTGCTCTTTCTGTTGCAACAGCCTACAAGACCCCCATAGGGGATCTGCCTATAGATTTGGAAGTAATTGAGGAGCTTAAAGCAACGGGGAAATTTGAACTGATGGATATTCGTGTTGATGAGGCTGAACATAGCATGGAAATGCATTTGCCATATCTTGTCAAAGTATTTGAGGGGCATCAAGTAAAAGTAGTACCCATTCTAATTGGTGCTCTTAGCGCTGAGAATGAAGCGTTTTATGGGCAAATGCTTGCCAAATATGTGGATGATCCACATAATTTCTTTTCCGTGTCATCAGATTTTTGTCATTGGGGATCACGATTCAATTACATGTATCATGACAAGAAACATGGGCCTATATACAAATCTATTGAGGCCTTGGACAAGATGGGCATGGACACTATAGAAACAGGAGATCCAGATGCATTCAAGAAATATCTTTCCGAGTATGACAACACAATCTGTGGACGCCATCCCATTAGTGTTTTTCTCCATATGCTTAGGAATAGCTCAACAAGCATAAAAATCAAATTCCTTCGCTACGAGCAGTCCAGTCAGTGCAAAACTACGAGGGACAGCAGCGTTAGTTATGCATCTGCAGCAGCAAAAGTTGATGGTTCAAGCTCTAGTTGA 3309 0.4316 MGKPLAGKKKDLSDRKATNATGRSSRLSERTTKAIVDEDTTMFINMSHELKEEGNKLSQKKDHEGAILKYEKALKLLPKNHIEIALLRNSMAWCYMQMGLGEYPKAINECNLALEVSPRYSKALVRRAKCYEELNRLDLALRDVHNVLSWEPNNLHAFEILESLKTIMEEKGITIDEQKIGLLSPGARLRNVVREKLKKKKGKKRETDKAEDKVVVEENLKAVKTEQVVTKTIDQEKLIVEPVKEETKVTRTAKLVFGEDIRWAQLPVNCSLKLVRDIIRDRFPGLKGVLVKYKDPDGDLVTITTNEELRLAESSGNVLGSVRLHIREVDPSQEPSYEEITSEQKQVRTDDDAIKQNGPTEERKDIARKRTTTVEEWIVQFARLFKNHVGFDSDVYLDLHEIGMTLYTEAMEDTVTSDEAQELFDISVDKFQEMAALAMFNWGNVHMSKARKRPSISDDASRESSLENIKVAYVWAQKQYKLAETRYEEAVKIKPDFYEGFLALGHQQFEQAKLCWFYAIASKEDLESGSSSDDVLQLYNKAEDSMEKGMLMWEEMEEQRLNGLSKSEKYKAQLEKMGLDSIFKDVSFAEATEHVDNMRSQINLLWGTLLYERSVVEYKLGLPTWEECLEVSVEKFELAGASQTDIAVMIKNHCSNVTALEGWGFKIDEIVQAWNEMYDAQRWQFGVPSFRLEPLFRRRAPKLHYIRSSKQDSVPSLSSSFNDGIGFFAHCCLFHCVNGMLQIMLSGSRHVPLNLFLVSSNFRVAIFRLRIRALHRLGGRPWRDSIIRPFRVFSLLSNFFPKLKSPIMEKVRRASHAGSWYTDNPKQLSDELDGWLRSSGLTKSPDVRGVIAPHAGYSYSGRAAAYAFGNIDPSNIIRVFLLGPSHHYYTPKCALSVATAYKTPIGDLPIDLEVIEELKATGKFELMDIRVDEAEHSMEMHLPYLVKVFEGHQVKVVPILIGALSAENEAFYGQMLAKYVDDPHNFFSVSSDFCHWGSRFNYMYHDKKHGPIYKSIEALDKMGMDTIETGDPDAFKKYLSEYDNTICGRHPISVFLHMLRNSSTSIKIKFLRYEQSSQCKTTRDSSVSYASAAAKVDGSSSS 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0657 1102 PANTHER PROTEIN CLMP1 1 707 IPR044517 -
Lele01g0657 1102 SUPERFAMILY TPR-like 47 513 IPR011990 GO:0005515
Lele01g0657 1102 CDD PB1 258 327 - -
Lele01g0657 1102 SMART PB1_new 250 329 IPR000270 GO:0005515
Lele01g0657 1102 Pfam Memo-like protein 814 1092 IPR002737 -
Lele01g0657 1102 SMART tpr_5 47 80 IPR019734 GO:0005515
Lele01g0657 1102 SMART tpr_5 464 497 IPR019734 GO:0005515
Lele01g0657 1102 SMART tpr_5 85 120 IPR019734 GO:0005515
Lele01g0657 1102 SMART tpr_5 121 154 IPR019734 GO:0005515
Lele01g0657 1102 ProSiteProfiles TPR repeat profile. 121 154 IPR019734 GO:0005515
Lele01g0657 1102 Gene3D Tetratricopeptide repeat domain 39 182 IPR011990 GO:0005515
Lele01g0657 1102 Pfam PB1 domain 251 328 IPR000270 GO:0005515
Lele01g0657 1102 ProSiteProfiles PB1 domain profile. 250 329 IPR000270 GO:0005515
Lele01g0657 1102 Hamap MEMO1 family protein <locus_tag>. 810 1095 IPR002737 -
Lele01g0657 1102 SUPERFAMILY TPR-like 433 673 IPR011990 GO:0005515
Lele01g0657 1102 MobiDBLite consensus disorder prediction 1 17 - -
Lele01g0657 1102 CDD MEMO_like 813 1084 IPR002737 -
Lele01g0657 1102 SUPERFAMILY CAD & PB1 domains 250 339 - -
Lele01g0657 1102 ProSiteProfiles TPR repeat profile. 47 80 IPR019734 GO:0005515
Lele01g0657 1102 TIGRFAM AmmeMemoSam_B: AmmeMemoRadiSam system protein B 812 1093 - -
Lele01g0657 1102 Gene3D - 237 328 - -
Lele01g0657 1102 MobiDBLite consensus disorder prediction 1 31 - -
Lele01g0657 1102 Gene3D - 810 1096 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0657 Lele-ChrLele01 3840760 3847299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0657 37 154 Calmodulin-binding Proteins AT3G25230 33.077 2.64e-07 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0649 25 4098684 4100881 Lele01g0657 01 3840760 3847299 CCT
Lele26g0661 26 4200229 4202426 Lele01g0657 01 3840760 3847299 CCT
Lele27g1435 27 20584382 20586579 Lele01g0657 01 3840760 3847299 CCT
Lele01g0657 01 3840760 3847299 Lele25g0635 25 4011376 4014353 CCT
Lele01g0657 01 3840760 3847299 Lele26g0650 26 4125467 4128455 CCT
Lele01g0657 01 3840760 3847299 Lele27g1449 27 20672253 20675231 CCT
Lele01g0657 01 3840760 3847299 Lele28g0633 28 4034251 4037242 CCT
Lele01g0657 01 3840760 3847299 Lele03g0657 03 3848887 3851103 hybridization