Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0634 ATGACTGATATATATAATCCCCGCATGAGATCCAGGGAATTAATAGCAGAATGCCCAGGATTCCTTGAGGTCTACTCCGAGGGTCCCGTCAAGCGCTTTGCCCCTGAAATAGCGCCGCCTTCTGCAAAATCGTCCGACTCCTGCAAATCCAAGGACGTGATCATCCACCCCTCAAAACCCGTCACCGGAAGGCTCTTCGTCCCTCGTTCTCCTTCCCCCTCCCACAAGCTTCCCGTCTGGGTTTACTTCCACGGCGGCGGTTTCTGCATCGGCTCCTTCACATGGCTCGGCTACTACCAATTCCTATCCGACTTCTCAGTCGCCTGTCAGTCCATTGTTCTTTCCGTCGATTACCGTTTGGCTCCGGAGCATCGGCTTCCTATGGCTTACGAAGATTGCTACAGCTCGCTCGAATGGTTTCACGATCAAGCCATCAGCTCTGAGCCTTGGCTTCATCAAGCTGACCTCTCTCGGGTGTTTGTCTCCGGCGACAGCGCCGGTGGAAACATCGGGCACCACGTCGCCGTGATGGCGATTCAGAACAATAATCCACGTGACTTGAAAATCAAAGGGATATTACCGATACACCCTTATTTTGGAAGCGAGAAGAGGACGGAGAAAGAGAAAGCAGATGAAGGGGGAGAAGAAGTGAGATCGAATGACATGTTTTGGAGGCTAAGTATACTACCAGAAGGCTCAGACGGAGACTACTATGGGTGCAATTTTGAGATGCGTGAAAGTGAATGGTCTGTATTCCCAGCAATTAAAGTACACGTGGCTGGGAAGGATTTTCTGAAGGAAAGAGGAGAGATGCATGCAGAGTTCATGAAGAAGAAAGGAGCCAGAGGGGTGGAGATAGAGCCAGAGTTCATACTCTTTGAACCGCGAGCTAGTCTTCTCATCCAATTCTTCGCGCAGAATATGGGAGAAACAAAGGATGAAGGATACGAGGAAGAGCTCCTTGACTATGAAGAGGAAGAAGACAAAGCCCCTGATTCCGTCGGAACCAAAGTCAATGGCGAAGCTGTCAAGAAGGGCTACGTTGGGATTCACAGTTCGGGATTCAGAGACTTTCTTCTGAAGCCAGAGCTTCTTCGTGCCATTGTAGACTCGGGATTTGAGCATCCTTCTGAAGTACAACATGAATGCATTCCTCAAGCAATCCTTGGAATGGATGTGCTTTGCCAAGCTAAATCTGGAATGGGAAAAACTGCTGTCTTTGTTCTCTCAACCTTGCAGCAGATTGATCCTGTTGCAGGCCAAGTTGCTGCCCTTGGTCTATGTCATACAAGGGAATTAGCATACCAGATATGCCATGAGTTCGAGAGGTTCAGTACATACTTGCCTGATCTTAAGGTTGCTGTCTTCTATGGCGGTGTCAACATTAAAGTTCACAAGGACCTGTTGGAAAATGAATGCCCTCATATTGTTGTTGGAACACCTGGAAGAATACTAGCATTGGCCAGGGATAAGGATCTTTCATTAAAGAATGTCAGGCATTTTATTTTGGACGAGTGTGATAAGATGTTGGAATCACTGGACATGAGGAGAGATGTGCAAGAGATCTTCAAGATGACTCCTCACGATAAGCAAGTTATGATGTTTTCTGCAACACTGAGCAAGGAAATTCGCCCAGTCTGCAAGAAGTTTATGCAAGATCCTATGGAAATTTATGTTGATGACGAGGCCAAGCTGACCCTACATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAAGAGAAGAACCGGAAGTTGAATGATCTTCTTGATGCATTAGACTTCAACCAAGTTGTTATCTTTGTGAAGAGTGTCAGTAGAGCAGCTGAGCTTGACAGACTACTTGTGGAATGCAACTTCCCATCTATATGTATCCACTCTGGCATGTCACAGGAAGAAAGATTAAAGCGTTATAAAGGTTTTAAGGAGGGACATACCAGGATTCTTGTGGCAACAGACTTGGTTGGGAGGGGAATTGACATTGAACGTGTTAACATTGTAATAAACTATGACATGCCTGATTCTGCAGACACTTACTTGCACAGGGTTGGCAGAGCTGGAAGGTTTGGAACCAAAGGTCTTGCAATTACATTTGTTTCATGTGCTGCTGATGTTGATGTTCTTAACAACGTTCAGTCAAGGTTCGAAGTTGATATAAAGCAGCTTCCGGAGCAGATTGATACCTCTACATACATGCCATCATAG 2205 0.463 MTDIYNPRMRSRELIAECPGFLEVYSEGPVKRFAPEIAPPSAKSSDSCKSKDVIIHPSKPVTGRLFVPRSPSPSHKLPVWVYFHGGGFCIGSFTWLGYYQFLSDFSVACQSIVLSVDYRLAPEHRLPMAYEDCYSSLEWFHDQAISSEPWLHQADLSRVFVSGDSAGGNIGHHVAVMAIQNNNPRDLKIKGILPIHPYFGSEKRTEKEKADEGGEEVRSNDMFWRLSILPEGSDGDYYGCNFEMRESEWSVFPAIKVHVAGKDFLKERGEMHAEFMKKKGARGVEIEPEFILFEPRASLLIQFFAQNMGETKDEGYEEELLDYEEEEDKAPDSVGTKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVAGQVAALGLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLENECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDRLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCAADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0634 734 Gene3D - 566 733 IPR027417 -
Lele01g0634 734 SUPERFAMILY alpha/beta-Hydrolases 57 282 IPR029058 -
Lele01g0634 734 SMART ultradead3 372 573 IPR014001 -
Lele01g0634 734 Pfam alpha/beta hydrolase fold 81 282 IPR013094 GO:0016787
Lele01g0634 734 SMART helicmild6 609 690 IPR001650 -
Lele01g0634 734 CDD SF2_C_DEAD 570 699 - -
Lele01g0634 734 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 351 708 - -
Lele01g0634 734 Gene3D - 349 565 IPR027417 -
Lele01g0634 734 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 353 381 IPR014014 GO:0003724
Lele01g0634 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 701 IPR027417 -
Lele01g0634 734 Gene3D alpha/beta hydrolase 27 295 IPR029058 -
Lele01g0634 734 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 569 730 IPR001650 -
Lele01g0634 734 CDD DEADc_DDX39 352 559 - -
Lele01g0634 734 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 384 557 IPR014001 -
Lele01g0634 734 FunFam DEAD-box ATP-dependent RNA helicase 56-like 341 559 - -
Lele01g0634 734 FunFam DEAD-box ATP-dependent RNA helicase 566 734 - -
Lele01g0634 734 Pfam DEAD/DEAH box helicase 378 543 IPR011545 GO:0003676|GO:0005524
Lele01g0634 734 Pfam Helicase conserved C-terminal domain 583 690 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0634 Lele-ChrLele01 3705531 3713262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0634 308 734 Eukaryotic Initiation Factors Gene Family AT5G11200 82.942 0.0 750