Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0611 ATGATTTTCTTGGAGCCACTGTCTTTGGGTTTTCGATTGGGGCCAGGTTTATTTCCGCTGGTTCAACATGCTTTGTATCTTATAAGTGGTTCGGAATATTATATTGGGTATCTTAGGGTTTGTGGTCTCTGCAAGTTTAAGGGATATTCAATGGAATTGTCACCTCTGGCTCCTGAACTTTGGCTAGATGTTTATATCCATGATTACCTAGTTAAGAGGGACTTAAAGGCTTCTGCCCAGGCTTTTCAAGCTGAAGGAAAAGTATCCTCGGATCCCGTTGCTATCGATGCCCCGGGAGGATTTCTGTTCGAGTGGTGGTCAGTATTCTGGGATATATTTATCGCCCGGACTAATGAGAAGCACTCAGAAGTTGCTGCATCGTATATTGAGACACAGGTGTATGAAGAGAGGTTGAAACCTCCCCTTCAGAGGGATTCTTTGGATGATGCAGCCATGAAGGTAAGGCAAAAATTTGGTGACAACATGGGCCAACTCCTGGACCCAAATCACGCCTCAATAATGAAGTCAGCTGCAGCTTTTGGCCAGTCTTCAGGCGTGTTTTGGGGACGGGTTAGTGGAGGACCTGACGGATATTTAATGGGAATTCCTGGATCAAATCAGGGCAGCAACAACTTCACTCTGAAAGGATGGCCACTTACAGACTTTGAACAACTGCGCTCTGGCATTCTTCATCAACAAAAGCCTTTTATACAGGCTCCTCAACCCCTTCATCAATTACAAATGTTGACACCTCACCATCAACAGCAGCTTATGCTTGCCCAGCAAAATTTGTCATCCCCATCTGCCAGTGATGAGAATAGAAAACTGAGAATGCTACCGAGTCAAAGGAATATGGGCCTAAATAAGGACGGCCTTCCAAATCCTGTTGATGTGGTTCCAAATGTTGGATCACCTCTTCAAGCTGGTGGCCCTCTTTTGCCTCGTGGGGATACAGATATGCTAATGAAGGTGCTATTTTCTTATTGA 987 0.4498 MIFLEPLSLGFRLGPGLFPLVQHALYLISGSEYYIGYLRVCGLCKFKGYSMELSPLAPELWLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQVYEERLKPPLQRDSLDDAAMKVRQKFGDNMGQLLDPNHASIMKSAAAFGQSSGVFWGRVSGGPDGYLMGIPGSNQGSNNFTLKGWPLTDFEQLRSGILHQQKPFIQAPQPLHQLQMLTPHHQQQLMLAQQNLSSPSASDENRKLRMLPSQRNMGLNKDGLPNPVDVVPNVGSPLQAGGPLLPRGDTDMLMKVLFSY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0611 328 ProSiteProfiles LIS1 homology (LisH) motif profile. 62 90 IPR006594 GO:0005515
Lele01g0611 328 PANTHER TRANSCRIPTION ACTIVATOR MSS11 131 185 - -
Lele01g0611 328 Pfam LisH 62 86 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0611 Lele-ChrLele01 3585976 3589511 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lele01g0611 LisH 4e-06 CL0561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele27g1487 27 20909923 20912034 Lele01g0611 01 3585976 3589511 CCT
Lele28g0596 28 3814586 3816741 Lele01g0611 01 3585976 3589511 CCT
Lele25g0594 25 3774568 3781852 Lele01g0611 01 3585976 3589511 CCT
Lele26g0608 26 3879238 3889134 Lele01g0611 01 3585976 3589511 CCT
Lele01g0611 01 3585976 3589511 Lele03g0612 03 3598226 3605464 hybridization
Lele01g0611 01 3585976 3589511 Lele04g0617 04 3728120 3735580 hybridization