Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele01g0603 | ATGGGGATAGATTACTACAATATATTGAAGGTTGATAAAAATGCTACAGACGATGATCTGAAGAAGTCATATAGAAAGTTAGCCATGAAATGGCATCCTGACAAGAATCCTAACGACAAAAGAGAAGCTGAAGCGAAATTCAAGCAGATCTCAGAAGCCTATGAGGCAAGAATTTCTTCTTATCAATTTCTTTTGCCCTTGTGCTCTATGAATGTACTAAGCGACCCTCAGAAGAGGATGATTTATGATCAGCACGGAGAGGAAGGGTTGAAAGATGTGCCACAGCCAGGGAATGGACCATCAAGTGGGTTTAATCCCAGAAGCGCTGAGGACATTTTTGCAGAATTCTTTAGTAGCCCTGTTGGATTTGGATCATCTGGACCAGGCAAGTCTATGAGCTACCAGTCGGAAGGACCTGGAATATACGGTGGTTTTGGTGGAGGCGACAACGTTTTTCGTACATACAATGACGGCAAGCAAATGCCAAAAAAGCCGCCAGCTGTGGAGAGCAAATTGCCTTGCAGCCTGGAGGAGTTATACTCTGGATCCACAAGGAAAATGAAGATCTCAAGGACTATCGATGCCAATGGACGGCCAGTTACAGAAACAGAGATATTAAGCATTGATGTAAAACCCGGGTGGAAGAAAGGTACCAAGATCACTTTCCCAGATAAAGGGAATCAACAATCAAATCAACTGCCTGCTGACCTTGTGTTCGTGATTGATGAAAAGCCTCATGATTTGTACACGAGAGATGGGAATGACCTGATTGTGAGCCAAAGGGTGTCACTAGCAGAGGCAATAGGAGGAAAAACAGTGAATCTCACCACACTCGATGGACGGAGCTTATCAATACCAGTGACTGACATTGTAAGCCCTGGTTATGAGCTTCTTGTTCCAAAGGAAGGAATGCCAATAACAAAGGAACCTGGGAATAGGGGTGATTTGAAGATCAGATTTGAGGTGAAGTTCCCTACAAGGTTGACCCCACTGCAACAAGCAGGCCTCAAACGAGCATTGGGGGGTTGA | 1029 | 0.4451 | MGIDYYNILKVDKNATDDDLKKSYRKLAMKWHPDKNPNDKREAEAKFKQISEAYEARISSYQFLLPLCSMNVLSDPQKRMIYDQHGEEGLKDVPQPGNGPSSGFNPRSAEDIFAEFFSSPVGFGSSGPGKSMSYQSEGPGIYGGFGGGDNVFRTYNDGKQMPKKPPAVESKLPCSLEELYSGSTRKMKISRTIDANGRPVTETEILSIDVKPGWKKGTKITFPDKGNQQSNQLPADLVFVIDEKPHDLYTRDGNDLIVSQRVSLAEAIGGKTVNLTTLDGRSLSIPVTDIVSPGYELLVPKEGMPITKEPGNRGDLKIRFEVKFPTRLTPLQQAGLKRALGG | 342 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele01g0603 | 342 | Gene3D | - | 166 | 244 | - | - | |
| Lele01g0603 | 342 | ProSiteProfiles | dnaJ domain profile. | 4 | 86 | IPR001623 | - | |
| Lele01g0603 | 342 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 169 | 247 | IPR008971 | GO:0006457|GO:0051082 | |
| Lele01g0603 | 342 | FunFam | DNAJ heat shock family protein | 245 | 340 | - | - | |
| Lele01g0603 | 342 | FunFam | Dnaj homolog subfamily b member | 163 | 244 | - | - | |
| Lele01g0603 | 342 | CDD | DnaJ_C | 168 | 328 | - | - | |
| Lele01g0603 | 342 | PRINTS | DnaJ domain signature | 42 | 62 | IPR001623 | - | |
| Lele01g0603 | 342 | PRINTS | DnaJ domain signature | 78 | 97 | IPR001623 | - | |
| Lele01g0603 | 342 | PRINTS | DnaJ domain signature | 6 | 24 | IPR001623 | - | |
| Lele01g0603 | 342 | PRINTS | DnaJ domain signature | 24 | 39 | IPR001623 | - | |
| Lele01g0603 | 342 | Gene3D | - | 246 | 326 | - | - | |
| Lele01g0603 | 342 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 249 | 332 | IPR008971 | GO:0006457|GO:0051082 | |
| Lele01g0603 | 342 | CDD | DnaJ | 4 | 55 | IPR001623 | - | |
| Lele01g0603 | 342 | Gene3D | DnaJ domain | 3 | 126 | IPR036869 | - | |
| Lele01g0603 | 342 | Pfam | DnaJ C terminal domain | 168 | 325 | IPR002939 | - | |
| Lele01g0603 | 342 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 1 | 340 | - | - | |
| Lele01g0603 | 342 | Pfam | DnaJ domain | 4 | 55 | IPR001623 | - | |
| Lele01g0603 | 342 | SMART | dnaj_3 | 3 | 78 | IPR001623 | - | |
| Lele01g0603 | 342 | SUPERFAMILY | Chaperone J-domain | 3 | 124 | IPR036869 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele01g0603 | Lele-ChrLele01 | 3540421 | 3542561 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele01g0603 | 5 | 130 | C2H2 Transcription Factor Family | AT1G74250 | 35.115 | 3.84e-08 | 53.1 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele01g0603 | 01 | 3540421 | 3542561 | Lele01g0603 | 01 | 3540421 | 3542561 | ECH | |
| Lele01g0603 | 01 | 3540421 | 3542561 | Lele03g0605 | 03 | 3560641 | 3562774 | hybridization | |
| Lele01g0603 | 01 | 3540421 | 3542561 | Lele04g0611 | 04 | 3698892 | 3700982 | hybridization |