Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0580 ATGCCGGGTTTGACATGTAATGCTTGCAACAAGGAGTTCAGCGACGATGCTGAGCAAAAGATTCATTACAAATCCGAGTGGCACAGATACAATCTCAAGCGCAAGGTGGCCGGTGTTCCTGGGGTGACAGAAGCACTGTTCTTGGCTAGACAGTCTGCAGCTGCTCAAGAGAAAGATAAAAATGAAACTCCCATGCTCTATAGTTGTGGCCTTTGTGGAAAAAGTTATAAAAGTTCAAAGGCTCATGCTGAGCATCTCAAATCCCGGGGTCATTTGATGCGGGCATCTGAAGGAAGTAGTCCTTCATATGACAAGGCAATAGTCAAACCGCGAGCACAACGTGTAGTGAACAGACCTCCTCCCAGAAGAGATGTGGACAGTGATGAAAGTGAAGGAAGTGAAGATGAATGGGAGGAGGTCGATCCTGAGGATCCTTTGATTAATTATGCTTCAACGTCCCTGACTGGTTTGAATGTGAATGAGCATGATAAGAATGTTGATATGGACGAAGATGATGATGATTATGGGGATTTGGATCCATCATGCTGTTTTATGTGTGATCAAAAGCATGATACTATAGAAAGTTGCATTGTTCACCTACACAAGCAGCATGGATTCTTCATTCCTGATGTTGAGTATTTAAAGGATCCACAAGGCCTGCTCACCTATCTAGGCCTTAAGGTCACGAGGGATTATATGTGTCTTTACTGCAATGATAGATGCCATCCTTTCAGCAGCCTGGAAGCAATTAGGAAACACATGGCAGCCAAAAGTCACTGTAAAGTGCATTATGGTGATGGCGATGACGATGAGGAAGTGGAGTTGGAAGAATTCTATGATTATAGCAGCAGTTATGTGGATGAGCAAGGGAAGCAACTAGTTGCATCAGGTGACGGAGACAACAATATAGAACTTGGCAGTGGTGGATCGGAGCTCATAATCACCAAGAAATCAAATGATGGAATATCAACCAGAACACTTGGTTCACGTGAATTTTTGCGTTATTATCGTCAAAAACCCCGACCATCACCCACAAATAACATGGCTGTTGCTGCTGCATTGGCTTCAAGGTACAGGAGCATGGGTTTGGCGACAGTGCAATCAAGGGAGCAAATGGTGAGGATGAAAGTGCTGAAGGAAATTAATAGGACTGGCGTGGAAGCCTTGCGTTCTAAAATAGGGATGAAAAGTAATGTCATCCGGAACTTGCCAAAGAATTGCCCATATTAG 1230 0.4398 MPGLTCNACNKEFSDDAEQKIHYKSEWHRYNLKRKVAGVPGVTEALFLARQSAAAQEKDKNETPMLYSCGLCGKSYKSSKAHAEHLKSRGHLMRASEGSSPSYDKAIVKPRAQRVVNRPPPRRDVDSDESEGSEDEWEEVDPEDPLINYASTSLTGLNVNEHDKNVDMDEDDDDYGDLDPSCCFMCDQKHDTIESCIVHLHKQHGFFIPDVEYLKDPQGLLTYLGLKVTRDYMCLYCNDRCHPFSSLEAIRKHMAAKSHCKVHYGDGDDDEEVELEEFYDYSSSYVDEQGKQLVASGDGDNNIELGSGGSELIITKKSNDGISTRTLGSREFLRYYRQKPRPSPTNNMAVAAALASRYRSMGLATVQSREQMVRMKVLKEINRTGVEALRSKIGMKSNVIRNLPKNCPY 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0580 409 ProSitePatterns Zinc finger C2H2 type domain signature. 69 91 IPR013087 -
Lele01g0580 409 Gene3D Classic Zinc Finger 4 89 - -
Lele01g0580 409 SUPERFAMILY beta-beta-alpha zinc fingers 66 97 IPR036236 -
Lele01g0580 409 SUPERFAMILY beta-beta-alpha zinc fingers 169 228 IPR036236 -
Lele01g0580 409 SMART c2h2final6 181 204 IPR013087 -
Lele01g0580 409 SMART c2h2final6 4 28 IPR013087 -
Lele01g0580 409 SMART c2h2final6 232 259 IPR013087 -
Lele01g0580 409 SMART c2h2final6 67 91 IPR013087 -
Lele01g0580 409 MobiDBLite consensus disorder prediction 129 143 - -
Lele01g0580 409 Pfam C2H2 type zinc-finger (2 copies) 183 284 IPR041661 -
Lele01g0580 409 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Lele01g0580 409 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Lele01g0580 409 MobiDBLite consensus disorder prediction 83 145 - -
Lele01g0580 409 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 96 IPR013087 -
Lele01g0580 409 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Lele01g0580 409 PANTHER ZINC FINGER PROTEIN 622 2 408 IPR040025 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0580 Lele-ChrLele01 3417913 3420107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0580 1 409 C2H2 Transcription Factor Family AT4G31420 63.133 2.38e-178 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele01g0580 zf-C2H2_2 5.3e-25 CL0361