Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0572 ATGGATAAATATGATGGTAAAAGAGCTGTTGATAAGGATGTAGTCTCTAGAAAGGGAATGCCTAATGTATTCAGAACTGTTGCTGATACTAAGGATCGAAGTGTTCAGTTGTGCAGCCGACCTAATTGCAGTAGCAGGATTCACTCTTCTATAGTTGCTGAGAATAGTTCCTGTAGGAAAGGTAAATCCTTGAGGCCTTCAACCCAATCCTCTTTAAGTGGGAAGGAAGCAGTTGGAAGATCCTGCAGAACTTTCTCGGGAATTAGTAATCAGAGAAAGTCCCTTAAAGAGCCTCGGCAAACATTATCGTCTAGGTTAGAGACAGATTCATCGGAATCTAGCAGCAGCATGCATGATGAACCTCCATCTGCACCTTATCAAAGTCAGCTTCAAGCTGAACAAGGACACGCCGAGTCTGATAACGTGATGGTGCTGGAAGTCGCGAGCACCATAGGTGTTTCAAGAACAAGATCTCAGAGGAATTTTCATCAACCTGGATTGCATGGTCAAGAAACTAAAAGCATTGGCTCAGTGACACGTGCTGGTACCTGCCGATATAATTTGAGGAACGTCAAGTGCAACTCAATAAATGATGTTAGCTCCACAGGTTCTTCTTCTTCTTCAGATTCAACCATGAATAGAAGGAAGGATGTCGTGAAGGAAAGAAATTATGGAAGGAAAAGAAGTTCTACTTCCACTGCCAGAGGGAATAAGTTGAGTGGGTCTTTATTGGAAGGACAAAATTCTGGTTCTGGAATTGGCATATCTATTTCTGATCCAAGAAGATCAAGAAATATTCCTACTCACCGGGACAACATTGCATCGGTTAGAACTCGAAGGTCTACAAGTGGTAATGCTAGGGAAAGGCTTCCAAGCCATGGGAATGCACACCCTATTCAGCCTAATGAATCCCCTTTGCCTCATGAACTTGTTTTTCCACATCATGCTTCTGCAGAGTCTACTATAATTCGATTAAGCACCCATAGTAGACCAGGTTCGAGCGACGGGCAGTCCGCATCTCCTGCAGAATATAACGTTACTTTTCCTCTAAGAAATCGGAGTAGACTACAGCACCAAAACAGTATTGCTGAGGTATTATTAGCACTCGAGAGGATTGAACAAGATGAAGAGCTGACAGAGGAGCAGGAAATTCGTTTACTAGAGACAAATTTCCTCCTTAATGGACCATACTTATATGATCAGCATAGAGACATGCGTATGGATATTGATAATATGTCATACGAGGAACTATTAGCCCTGGAAGAAAGGATGGGTACTGTGAGCATAGCTTTAACTGAGGAAGCACTGTCAGGATGCCTTGAGAGAAGCATCTATCAGTCTACACCTTCAGATGACAACGGCGACGACGAGAGCAGCAATATTATTAATGACCACATCAAATGCAGCATCTGCCAGGATGAATATGTGGTTGGAGATGAAGTGGGGAGTCTGCAGTGTGAGCATGGATTTCATGTGGCTTGCATACAACAGTGGCTTGGCCTCAAGAACTGGTGCCCTATCTGCAAAGCATCAGCAGCACCTTCAGAGTCATCTAATCGGACCTGA 1566 0.4355 MDKYDGKRAVDKDVVSRKGMPNVFRTVADTKDRSVQLCSRPNCSSRIHSSIVAENSSCRKGKSLRPSTQSSLSGKEAVGRSCRTFSGISNQRKSLKEPRQTLSSRLETDSSESSSSMHDEPPSAPYQSQLQAEQGHAESDNVMVLEVASTIGVSRTRSQRNFHQPGLHGQETKSIGSVTRAGTCRYNLRNVKCNSINDVSSTGSSSSSDSTMNRRKDVVKERNYGRKRSSTSTARGNKLSGSLLEGQNSGSGIGISISDPRRSRNIPTHRDNIASVRTRRSTSGNARERLPSHGNAHPIQPNESPLPHELVFPHHASAESTIIRLSTHSRPGSSDGQSASPAEYNVTFPLRNRSRLQHQNSIAEVLLALERIEQDEELTEEQEIRLLETNFLLNGPYLYDQHRDMRMDIDNMSYEELLALEERMGTVSIALTEEALSGCLERSIYQSTPSDDNGDDESSNIINDHIKCSICQDEYVVGDEVGSLQCEHGFHVACIQQWLGLKNWCPICKASAAPSESSNRT 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0572 521 SUPERFAMILY RING/U-box 467 513 - -
Lele01g0572 521 MobiDBLite consensus disorder prediction 195 306 - -
Lele01g0572 521 ProSiteProfiles Zinc finger RING-type profile. 468 509 IPR001841 -
Lele01g0572 521 MobiDBLite consensus disorder prediction 56 97 - -
Lele01g0572 521 SMART ring_2 468 508 IPR001841 -
Lele01g0572 521 MobiDBLite consensus disorder prediction 263 286 - -
Lele01g0572 521 FunFam E3 ubiquitin-protein ligase arkadia 428 514 - -
Lele01g0572 521 MobiDBLite consensus disorder prediction 56 136 - -
Lele01g0572 521 MobiDBLite consensus disorder prediction 213 228 - -
Lele01g0572 521 MobiDBLite consensus disorder prediction 104 136 - -
Lele01g0572 521 Coils Coil 362 382 - -
Lele01g0572 521 Pfam Ring finger domain 467 509 IPR001841 -
Lele01g0572 521 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 74 513 IPR045191 GO:0061630
Lele01g0572 521 MobiDBLite consensus disorder prediction 229 262 - -
Lele01g0572 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 521 IPR013083 -
Lele01g0572 521 MobiDBLite consensus disorder prediction 195 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0572 Lele-ChrLele01 3377111 3379246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0572 362 512 C3H Transcription Factor Family AT2G15530 40.252 3.80e-30 123