Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0554 ATGGAGACTAAGAGAGAAGTACATCATATCATTTCCATGGATCCAAAGAAATCTAACAAGATCAGAGATATTGTTAGGCTTCAACAGATCCTCAAGAAATGGAGAAAACAAGCCAACTCTTCAAAAACCAGTGGCAGTAATAGCATCACTAGCAGTAAAAGCATCAAGTTTCTGAAGAGGACACTTTCTATATCTGAACGACAAGGGGGATCAAGCAATGTTGTTCCAAAAGGCTATCTTGCTGTTTGCGTTGGGGAAGAGATGAAGAGGTTCGTTATACCTACTGAATATCTGAGCCATCATGCATTTCATGTGTTACTGAGAGAAGCAGAAGAAGAATTCGGGTTTCAACAGACTGGTGTTCTGAGAATACCTTGTGAAGTTCCAGTTTTTGAGAGTATCTTGAAGATGGTGCAGGGAAAGAAGGACCAATATAGCACTCAAGAATGCAGACTTAAAGTTGAAGAAATATTGGGACACTGCTCATTAGAACCCCAGCTCGCTTACTGTCACCATCCCCAGAGTCCAATGTGCAGATAA 540 0.4093 METKREVHHIISMDPKKSNKIRDIVRLQQILKKWRKQANSSKTSGSNSITSSKSIKFLKRTLSISERQGGSSNVVPKGYLAVCVGEEMKRFVIPTEYLSHHAFHVLLREAEEEFGFQQTGVLRIPCEVPVFESILKMVQGKKDQYSTQECRLKVEEILGHCSLEPQLAYCHHPQSPMCR 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0554 179 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 46 134 IPR003676 GO:0009733
Lele01g0554 179 Pfam Auxin responsive protein 28 138 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0554 Lele-ChrLele01 3292724 3293263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0554 13 179 Calmodulin-binding Proteins AT4G31320 54.040 6.13e-59 181
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0554 01 3292724 3293263 Lele01g0554 01 3292724 3293263 ECH
Lele01g0554 01 3292724 3293263 Lele03g0559 03 3318867 3320028 hybridization
Lele01g0554 01 3292724 3293263 Lele04g0567 04 3441613 3442125 hybridization