Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0523 ATGAGCAAGTGTTTGGTGGTGTTCATCATGATTCTTTCATTGTCGTTGAATGTTCAGTCCCAAGGAACACCAGAGAGCATGCAAGAAGATATGCCTGAAACCATCCATCCTAGTAAAGGAATTATAATAGTAATCCTCGCCGTTATGTTTGCCATATCATTTCTCCTTCTGGCGTATGTTAAGTTCTGTAAAAGCCGTTCCACTGAGCCTCTTAACCTTGATATGAACAATCCTGGTATAAACCGATCGTGGTCAAGATATTCGGGCATAGACAAACAAGTAATCGAAGCACTGCCGTTTTTCAAGTTCTCTTCACTCAAGGGGTCAAAAGAAGGACTAGAATGTGCCGTTTGTCTCTCAAAATTCGACGACGCTGAGGTTCTTAGGTTGCTGCCCAAGTGTAAGCATGCTTTCCACATGAATTGCATCGACAAGTGGCTCGAATGTCACTCGACATGCCCTCTTTGCAGGTACAAGGTTGACCCTGGGGACATCAAGACGTTCAATTCCTCCATCAGTTCCAGGTTCCTTCGAGTTCCTTCCGACATAACAGAGGCCCCCGATCTTGAAATCTTCGTCCAGAGGGAGCAATCAAAGCCGGGCTCTCCCATATTAAACAACTGGAAACCTGCGCACAGGCTCAATCACAGGATAGTCATATCCGATGTTGCTACGAGGAGCAGGTGGAGTGATCTTAATTCCTCGGACTTGCTGTCGTTGAATTCGGAGATTCTCAGTGCTATGTCAAGCGCGACATTCTCTGCTTCAAACGAGGAAGACAACTCGTTCACGCTGTTGACTGCTCCGGGGGAGAAGAGATCGATGTCGGAGATTGCCAACGCGCCGAGATTTGCAGAAATAAGCGTGGAGGACGACGTGAGGGAAGAGAGAGTGAGGAGGATTTGGTTGCCGATGGTGGAGCGAACAGTGCAGTGGTTTGCGACACGAGAGAGCATCTCGACAGTGCCGCAACACAAAGGATTCGCTTCAAATGCCTGA 999 0.4775 MSKCLVVFIMILSLSLNVQSQGTPESMQEDMPETIHPSKGIIIVILAVMFAISFLLLAYVKFCKSRSTEPLNLDMNNPGINRSWSRYSGIDKQVIEALPFFKFSSLKGSKEGLECAVCLSKFDDAEVLRLLPKCKHAFHMNCIDKWLECHSTCPLCRYKVDPGDIKTFNSSISSRFLRVPSDITEAPDLEIFVQREQSKPGSPILNNWKPAHRLNHRIVISDVATRSRWSDLNSSDLLSLNSEILSAMSSATFSASNEEDNSFTLLTAPGEKRSMSEIANAPRFAEISVEDDVREERVRRIWLPMVERTVQWFATRESISTVPQHKGFASNA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0523 332 SUPERFAMILY RING/U-box 94 162 - -
Lele01g0523 332 Pfam Ring finger domain 114 157 IPR001841 -
Lele01g0523 332 SMART ring_2 115 156 IPR001841 -
Lele01g0523 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 163 IPR013083 -
Lele01g0523 332 CDD RING-H2_PA-TM-RING 114 157 - -
Lele01g0523 332 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Lele01g0523 332 FunFam RING-H2 finger protein ATL43 90 164 - -
Lele01g0523 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0523 Lele-ChrLele01 3111026 3112024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0523 18 317 C3H Transcription Factor Family AT2G20030 37.326 2.13e-71 225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0523 01 3111026 3112024 Lele03g0532 03 3138631 3139629 hybridization
Lele01g0523 01 3111026 3112024 Lele04g0531 04 3208779 3209777 hybridization