Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0476 ATGGAACTCTGTGAACATGATCATTTTTTGGAAGAACTACTGGCTGTGAGAAGGGAAACATGGGACACCATCCCATCAGAATCAAACCAACTCTTCTCTAATGGCTGGGGTTTTGATTGTTTTGATCAAAACTCTCTGGCTTTTCTTCCAAACTCTTCATGTCAAGAAATTCCTCAGAGTTGCTACAACAACAACAACAATTACGCCTTCAATGAAAACTACGGTTCCTTACTTGATGAATTCTCTGCTCCCCAGAATGTTGAATCATCTTCTTCATCCTATAACGTTCTCGATACTCCAGTTCTGGGTCAAGAAGATTACTCATTGTCCATGATGGAAGATTTGGAGGATCCGGGTTTGCTTGGGGATGAACTTCAGAGCTTGGACCTGCAAACCCCATGCAAGGTAGAGCCAAGCCAATCCCCAGAAATGGCAGTTGTCAATATGGGTGATGCGTCTCTGCAAAGAAAGAATCGAGCAAAGAAGCTTCAGGGCCAACCCTCCAAGAATTTAATGGCTGAGAGGAGGAGAAGAAAGAGGTTAAATGATCGCCTCTCAATGCTGAGATCAATTGTCCCCAAGATAAGCAAGATGGACAGAACATCTATCCTGGGAGACACTATAGATTACATGAAAGAACTCCTGGAGAAGATTAACAAATTGCAACAAGAATTAGAGATGGATTCAAACATGGGAGGCATTTTTAAGGATACAGAGCAAAATGAAATCTTGGTGAGAAATACACCCAAGTTTGAAGTGAAGAGGAGGAATGAGGATACACAGATTGAAATTTGCTGTGCAGGAAAGCCAGGATTGTTGCATTCTACAATGAACACTCTGGAAGCATTTGGTCTTGAGATTGAACAATGTGTAATAAGCTGTTTCAACGATTTCAGTGTGCAGGCTTCTTGCTCAGAGGAAATGGAGCAGAGGACAGTACTGAGTTGTGAAGACATAAAGCAGGCGTTATTTAGAAGCGCAGGGTATGGAGGAAGATGTTTGTAG 1005 0.4219 MELCEHDHFLEELLAVRRETWDTIPSESNQLFSNGWGFDCFDQNSLAFLPNSSCQEIPQSCYNNNNNYAFNENYGSLLDEFSAPQNVESSSSSYNVLDTPVLGQEDYSLSMMEDLEDPGLLGDELQSLDLQTPCKVEPSQSPEMAVVNMGDASLQRKNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINKLQQELEMDSNMGGIFKDTEQNEILVRNTPKFEVKRRNEDTQIEICCAGKPGLLHSTMNTLEAFGLEIEQCVISCFNDFSVQASCSEEMEQRTVLSCEDIKQALFRSAGYGGRCL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0476 334 Gene3D - 165 232 IPR036638 GO:0046983
Lele01g0476 334 SMART finulus 171 220 IPR011598 GO:0046983
Lele01g0476 334 Coils Coil 204 231 - -
Lele01g0476 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Lele01g0476 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 227 IPR036638 GO:0046983
Lele01g0476 334 Pfam Helix-loop-helix DNA-binding domain 171 214 IPR011598 GO:0046983
Lele01g0476 334 CDD ACT_UUR-ACR-like 260 323 - -
Lele01g0476 334 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 72 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0476 Lele-ChrLele01 2808660 2809955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0476 145 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 64.767 2.52e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele01g0476 HLH 7.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0476 01 2808660 2809955 Lele01g0476 01 2808660 2809955 ECH
Lele01g0476 01 2808660 2809955 Lele03g0485 03 2815042 2819749 hybridization
Lele01g0476 01 2808660 2809955 Lele04g0480 04 2891572 2892866 hybridization