Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0465 ATGTCGACCCCAGGGGTCCGATGGCACCTTCAAGGTCATCATGTGGTGATGAATAATGGCATACTCCAAGTTACCTTATCAAACCCTGAGGGAATTGTTACTGGGATTCGATATAATGGTGTTGACAATTTGCTTGAGGTCCTTAACAATGAGAATAATCGAGGGTACTGGGACCTTGTTTGGAGTCCACCAGGAAGCAAAGGAATCTTTGATGTGATAAAAGGAACATGTTTTAAAGTTATAGTTCAAAATGAGGATCAGGTGGAGCTTTCATTCACTCGAATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTTCCCTTAAATATTGATAAAAGATTTATATTGCTCCGTGGTTCATCAGGCTTCTACTCTTATGCAATCTATGAGCACTTAGCTGGATGGCCAGATTTTGATATTGGTGAAACGAGGATCACTTTCAAGCTAAGAAAAGACAAGTTTAATTACATGGCTGTTGAAGACAATAGGCAAAGGATTATGCCTCTTCCAGATGACCGGTTACCGGGAAGAGGCCAGCCCTTGGCCTACCCAGAAGCTGTTCTACTAGTCAATTCCAAGAATCCACAACTCAAAGACGAGGTGGATGACAAGTATCAATATTCATGTATTAACATGAATAATAAAGTCCATGGGTGGATATCTTTCAACCCACCAGTGGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGCGGACCCCTTAAGCAGAATTTGACCTCACATGTTGGCCCTACCACACTTGCTATGTTTCTTAGTTCACATTATGCGGGACAAGATTTAGATCCCAAATTTAGAGGTGGTGAACCGTGGAAGAAGGTTTTCGGTCCGGTTTTTATTTATCTTAATTCTGGACCAATTGGTGATGACCCACGTTGGCTGTGGGAGGATGCAAAAATACAGATGACAACTGAAGTCCAAAGTTGGCCATATTTTTTCCCAGCTTCAGAGGATTTCTTGAAGTCAGATCGACGGGGTACTGTTAGTGGTAGGCTACTTGTGTTGGACAGGTTCATCTGCACAGATTTGATGCCAGCAAATGGTGCTTATGTTGGTCTTGCTCCACCAGGAGAGGCAGGGTCATGGCAAAGAGAATGCAAGGATTATCAATTCTGGACCAGAGCAGATGAGTGTGGACTTTTTACAATTAAGAATGTACGTCCAGGGTACTACAACCTTTATGCTTGGGTCCCTGGTTTTGTTGGAGACTACAGATTTGATGATCTGATGAAGATAGATTCAGGTTCTTATATCGAATTGGGTGAAATTGTGTATGAGCCCCCAAGGGATGGACCCACGTTGTGGGAAATAGGCATTCCCGATCGATCTGCTGCAGAATTTTACATTCCTGATCCACGTCCGCATCTTGTTAATAGGCTTTTTGTCAACCATCCAGACAGGTTCAGGCAATATGGATTGTGGGACAGGTATACAGAACTGTATCCTGATGCTGATTTGATTTACACAGTTGGTGCTAGTGATTATTCCCGAAACTGGTTTTTCGCTCAGGTTCCCAGAAAGAAAGAGGATAACACTCTTCAAGGAACAACTTGGCAAATTAAGTTTGAACTCTGTAATGTTACTGAGGGAAGTACATATAAACTCAGAGTTGCAATTGCATCTGCAACATTAGCCGAAGTGCAGATTCGAATAAATGATCCAAATGCAAAGCGTCCCCTATTTACCACTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCATGGGCTCTATCGGCTGTACCATGTGAATGTACCTGGTGCTGCTCTTGTCAATGGCTTAAACACTATATTTTTAACGCAACCAAGATGCAACAGCCCTTTTCAGGGAATCATGTATGATTATATTCGTTTGGAAGGCCCTCCGTGTTTTTAG 1905 0.4262 MSTPGVRWHLQGHHVVMNNGILQVTLSNPEGIVTGIRYNGVDNLLEVLNNENNRGYWDLVWSPPGSKGIFDVIKGTCFKVIVQNEDQVELSFTRMWDPSLEGKFVPLNIDKRFILLRGSSGFYSYAIYEHLAGWPDFDIGETRITFKLRKDKFNYMAVEDNRQRIMPLPDDRLPGRGQPLAYPEAVLLVNSKNPQLKDEVDDKYQYSCINMNNKVHGWISFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLDPKFRGGEPWKKVFGPVFIYLNSGPIGDDPRWLWEDAKIQMTTEVQSWPYFFPASEDFLKSDRRGTVSGRLLVLDRFICTDLMPANGAYVGLAPPGEAGSWQRECKDYQFWTRADECGLFTIKNVRPGYYNLYAWVPGFVGDYRFDDLMKIDSGSYIELGEIVYEPPRDGPTLWEIGIPDRSAAEFYIPDPRPHLVNRLFVNHPDRFRQYGLWDRYTELYPDADLIYTVGASDYSRNWFFAQVPRKKEDNTLQGTTWQIKFELCNVTEGSTYKLRVAIASATLAEVQIRINDPNAKRPLFTTGLIGRDNSIARHGIHGLYRLYHVNVPGAALVNGLNTIFLTQPRCNSPFQGIMYDYIRLEGPPCF 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0465 634 Pfam Rhamnogalacturonate lyase family 12 200 IPR010325 -
Lele01g0465 634 CDD RGL4_M 331 430 IPR029413 -
Lele01g0465 634 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
Lele01g0465 634 Gene3D - 8 305 IPR014718 GO:0030246
Lele01g0465 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 13 632 - -
Lele01g0465 634 SUPERFAMILY Starch-binding domain-like 330 411 IPR013784 GO:0030246
Lele01g0465 634 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Lele01g0465 634 SUPERFAMILY Galactose mutarotase-like 13 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele01g0465 634 CDD RGL4_C 442 629 - -
Lele01g0465 634 Gene3D - 328 414 - -
Lele01g0465 634 Gene3D - 438 629 - -
Lele01g0465 634 CDD RGL4_N 6 299 - -
Lele01g0465 634 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Lele01g0465 634 FunFam Rhamnogalacturonate lyase B 328 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0465 Lele-ChrLele01 2733622 2737818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0465 1 632 Polysaccharide Lyase AT1G09910 70.886 0.0 936
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0465 01 2733622 2737818 Lele03g0477 03 2745926 2748867 hybridization