Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0464 ATGGCGCTAACCGGAGTGCAACTTCTTATTGAAGATACTCATGTGGTGATTGACAATGGAATACTAAAGGTGACCTTGTCAAATCCCGAAGGAATAGTCACAGGAATAGAATATAATGGCATCGACAACTTGCTTGAATATCAGAACGAAGAATCTAATAGAGGGATAAGGGGAACCAATTTTAAGGTGATAGTGGAAAATGAGCAACAAGGTGAGTTATCCTTCACAAGAATGTGGGATGCTTCACTTGAAGGCAAGCTGTTTCCCTTAAACATCGATAAAAGGTACATGGGCTGTTTTCATTACATGGCAATGGCAGATAATAGACAAATAAACATGCCTCTTCAAGGTAACAGAATCCCACCTAGAGGTCAACCCCTTGCTTATCCTGAGGCTGTTCTTCTTGCTAATCCTATCGAGGCTGAAAGGAGAGCAAGGTGCATGGCTGGATTTGACGGAGCCAGCAACGAATTCCGATCCGGTGGACCCCTCAAACAGAACCTAACTTCTCATGTGGGACCCACCACTCTTGCTATAGAAGTTCAAAGCTGGCCCTACAACTTTCCTGCCTCACAAGAATACCTAAAGTGGGACGAACGTGGCAATGTCAATGGTAGGCTACTCGTCCGAAACAGGTATATCAGAGATGATGATATCTCAGCAGAAGGAGCTTATGTTGGCTTGGCTCCACCAGGAGACGCTGGATCATCTCAAAGAGAATGCAAGAATTATCAGTTTTGGGCCAAAGCAGACGATGACGGATATTTCTCCATCAGCAATGTACGCCCTGGTGACTATAATCTCTACGCATGGGTCCCTGGTTTTATTGGTGATTATAGATATGATGTAGTTATGAACATAACTCCAGGTTGTGACATGGTCGTAGGTGATCTTGTATATGAACCTCCTAGAGATGGTCCAACATTGTGGGAAATAGGCATCCCTGATCGTACAGCTGCTAAGTTTTATGTTCCTGATCCCAATCCCAAATATGTCAACAAGCTCTATGTTAATCATCCTGACAAACTGGACACAGTGAACAAGAGAAGTGCCTATAAACTGAGCATAGCTCTGGCATCAGCAACGTTTTCTGAATTACAGGTTCGAGTTGATGATCCAAAAGCAGCTCGTCCTCTGTTTTCAAGTGGGTTGATAGGGAGGGATAACTCCATTGCTAGGCATGGCATTCATGGGCTCTATTGGCTTTTCACTGTCGACATATGA 1224 0.4395 MALTGVQLLIEDTHVVIDNGILKVTLSNPEGIVTGIEYNGIDNLLEYQNEESNRGIRGTNFKVIVENEQQGELSFTRMWDASLEGKLFPLNIDKRYMGCFHYMAMADNRQINMPLQGNRIPPRGQPLAYPEAVLLANPIEAERRARCMAGFDGASNEFRSGGPLKQNLTSHVGPTTLAIEVQSWPYNFPASQEYLKWDERGNVNGRLLVRNRYIRDDDISAEGAYVGLAPPGDAGSSQRECKNYQFWAKADDDGYFSISNVRPGDYNLYAWVPGFIGDYRYDVVMNITPGCDMVVGDLVYEPPRDGPTLWEIGIPDRTAAKFYVPDPNPKYVNKLYVNHPDKLDTVNKRSAYKLSIALASATFSELQVRVDDPKAARPLFSSGLIGRDNSIARHGIHGLYWLFTVDI 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0464 407 Pfam Polysaccharide lyase family 4, domain III 343 407 IPR029411 -
Lele01g0464 407 Pfam Polysaccharide lyase family 4, domain III 308 342 IPR029411 -
Lele01g0464 407 SUPERFAMILY Starch-binding domain-like 201 284 IPR013784 GO:0030246
Lele01g0464 407 Pfam Polysaccharide lyase family 4, domain II 222 292 IPR029413 -
Lele01g0464 407 SUPERFAMILY Galactose-binding domain-like 305 407 IPR008979 -
Lele01g0464 407 Pfam Rhamnogalacturonate lyase family 10 97 IPR010325 -
Lele01g0464 407 Pfam Rhamnogalacturonate lyase family 100 143 IPR010325 -
Lele01g0464 407 CDD RGL4_M 199 298 IPR029413 -
Lele01g0464 407 Gene3D - 198 288 - -
Lele01g0464 407 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 97 - -
Lele01g0464 407 FunFam Rhamnogalacturonate lyase B 196 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0464 Lele-ChrLele01 2728324 2732397 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0464 1 407 Polysaccharide Lyase AT1G09890 44.088 2.61e-156 453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0464 01 2728324 2732397 Lele01g0464 01 2728324 2732397 ECH
Lele01g0464 01 2728324 2732397 Lele03g0476 03 2739786 2743767 hybridization
Lele01g0464 01 2728324 2732397 Lele04g0469 04 2807104 2810925 hybridization