Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0463 ATGATGACGATAATCCTCACCAATCGTTTTCTGTTTTTCACGCTTCTTCTGGTTTTGGTTCAGGGCTATGCTCCTTATCCAGGATTGCGACTGGAAATTCAAGATAATCATATTGTGATGGATAATGGCATAGTCCAAGTCACCTTATCAAATCCTGAAGGATCAGTCACCGGAATCCAATACAATGGAATTGACAATTTACTTGAAGTTCAAAACAAGGAATTTGACAGAGGTTACTGGGATGTTGTATGGGGCGAGGCTGGTAAAAAAGGAACGAAGGGTACATTGGATCGGTTGGAAGCAACAAATTTTACAGTAATTGTTGAAAATGAAGAACAGTTAGAGTTGTCATTCACCAGAACATGGATGCCTTCCCTTGAGGGTAAGGTTCCGCCCCTCAATATCGATAAAAGATTCATAATGCTTCGTGGTTCATCGGGCTTCTACACCTATGCCATATATAAGCGTTTGAAGGGATGGCCTGGCTTCAATCTTGACAACACTCGGATTGCATTCAAGCTTCGGAAAGACAAGTTCCATTACATGGTTGTAACAGACGGTAGGCAAAGATTCATGCCTCTGCCTGATGACCGATTAGAAGGAAGAGGGCAAGTTCTGGCCTACCCTGAGGCTGTTCTCCTCGTCAATCCTGTTGAGCCTGAATTCAAAGGGGAGGTGGATGACAAGTATCAGTACTCGTGCGAGAGTCGCAACAACAGGGTTCATGGCTGGATATGTGTGGACCCATCTATTGGGTTCTGGCAAATTACACCAAGCTATGAGTTCCGATCTGCTGGGCCCCTCAAGCAATACATTACTTCCCACGTGGGCCCCACCACACTCTCTGTATTTCATAGCACGCATTATTCGGGAGCAGATCTAGTAATGAAATTTGGGCCTGAAGAAGAGTGGAAGAAAGTGTATGGACCCATTTTCATATACCTTAATTCTTTGTCTAACGGAGAAAGCCCGGTCATGCTATGGGAAGACGCTAAACAGCAGATGGTCAATGAACTTGAAAGCTGGCCCTATGCATTTCCAGCTTCACAAGACTTTCCCTCATCTGACCAACGAGGCAAGGTTAAAGGGAGATTACTGGTCCGAGACAAGTTTATCACGGATGGGTGCGTCCCAGCGAGTGGGGCCGATGTGGGATTAGCTGCCACAGGAGATGCCGGATCTTGGCAGAGAGAATACAAGGGTTATCAATTTTGGACCATCACTGATGATAAAGGCTACTTCACAATCACTGACATACGTGCCGGGCAATATAATCTTTACTCCTGGGTCACTGGCTTTATCGGTGATTATCGATATGACAATGTCATTAACGTAACCTCAGGTTGTGAAGATGATGTGGGAGAACTTGTTTATGAGCCTCCAAGAGATGGCCCTACATTGTGGGAAATAGGCATTCCTGATCGTTCTGCAGCTGAATTCTTTATTCCAGATCCAAATCCCAAGTACATTAACAGACTTTATGTCAATCATCCAGATAGGTATAGGCAATATGGATTGTGGGAGAGGTATGCAGAATTGTATCCAAATGAAGACTTGGTCTACACCATAGGAACAAGTGACTGCAAAAAAGATTGGTTTTTTGCTCAGGTTAATAGGAAGAAAGATAACAACACATACCAAGGAACCACATGGCGAATTAATTTCAAACTTGATAACGTAAACACCAACGGAACCTACAAATTGCGATTGGCTCTGGCATCTGCGCACGCTGCTGAGCTGCAAATTCGGGTAAATAACTCAGAAGCAAACCCAGCTTTGTTCTCAAGTGGAGAGATTGGAAAGGAGAACACAATAGCTAGACATGGAATTCATGGGCTATATTGGCTGTTCAACGTTGATGTACAAGGCACTCTACTTGTGCAGGGCAACAATACCTTTTTTCTAAAGCAAACAAGAAACACAAGTCCTTTTCAAGGGATTTTGTATGATTATATTCGCTTAGAAGGGCCCTCTGTAACTACTAACGATCGTAATATATAA 2001 0.4358 MMTIILTNRFLFFTLLLVLVQGYAPYPGLRLEIQDNHIVMDNGIVQVTLSNPEGSVTGIQYNGIDNLLEVQNKEFDRGYWDVVWGEAGKKGTKGTLDRLEATNFTVIVENEEQLELSFTRTWMPSLEGKVPPLNIDKRFIMLRGSSGFYTYAIYKRLKGWPGFNLDNTRIAFKLRKDKFHYMVVTDGRQRFMPLPDDRLEGRGQVLAYPEAVLLVNPVEPEFKGEVDDKYQYSCESRNNRVHGWICVDPSIGFWQITPSYEFRSAGPLKQYITSHVGPTTLSVFHSTHYSGADLVMKFGPEEEWKKVYGPIFIYLNSLSNGESPVMLWEDAKQQMVNELESWPYAFPASQDFPSSDQRGKVKGRLLVRDKFITDGCVPASGADVGLAATGDAGSWQREYKGYQFWTITDDKGYFTITDIRAGQYNLYSWVTGFIGDYRYDNVINVTSGCEDDVGELVYEPPRDGPTLWEIGIPDRSAAEFFIPDPNPKYINRLYVNHPDRYRQYGLWERYAELYPNEDLVYTIGTSDCKKDWFFAQVNRKKDNNTYQGTTWRINFKLDNVNTNGTYKLRLALASAHAAELQIRVNNSEANPALFSSGEIGKENTIARHGIHGLYWLFNVDVQGTLLVQGNNTFFLKQTRNTSPFQGILYDYIRLEGPSVTTNDRNI 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0463 666 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 34 658 - -
Lele01g0463 666 CDD RGL4_N 29 317 - -
Lele01g0463 666 SUPERFAMILY Starch-binding domain-like 357 448 IPR013784 GO:0030246
Lele01g0463 666 FunFam Rhamnogalacturonate lyase B 354 453 - -
Lele01g0463 666 Gene3D - 354 452 - -
Lele01g0463 666 CDD RGL4_C 468 655 - -
Lele01g0463 666 SUPERFAMILY Galactose mutarotase-like 34 318 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lele01g0463 666 CDD RGL4_M 357 456 IPR029413 -
Lele01g0463 666 Gene3D - 30 298 IPR014718 GO:0030246
Lele01g0463 666 Pfam Rhamnogalacturonate lyase family 33 226 IPR010325 -
Lele01g0463 666 Pfam Polysaccharide lyase family 4, domain II 380 451 IPR029413 -
Lele01g0463 666 Pfam Polysaccharide lyase family 4, domain III 466 654 IPR029411 -
Lele01g0463 666 SUPERFAMILY Galactose-binding domain-like 463 655 IPR008979 -
Lele01g0463 666 Gene3D - 464 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0463 Lele-ChrLele01 2722210 2726157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0463 26 658 Polysaccharide Lyase AT1G09890 66.457 0.0 885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0463 01 2722210 2726157 Lele03g0475 03 2735105 2738450 hybridization