Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0462 ATGTCAGCACAAGGAGTTCAGCTGCATATAGGAGAAACTCATGTGTCGATGGATAATGGTATAGTGAAAGTGTACTTATCCAAACCAGCAGGATTTGTCACTAGAATACAATACAACGGCGTTGATAATCTGCTTGAAGTTCTTAACGAAAGAGATAACAGAGGCACAGGAACCACTGGGATATTCGAGCGCGTCATCGGAACAAGTTTTAGAGTGGTAGTGGAAAATGAGGAACAGGTGGAGATCTCATTTACAAGAATGTGGGATCCATCTCTGAAGGGAAAGCTTTCGCCATTGAATATAGACAAAAGGTATGTCATGCTTCGAAATTCCGCAGGTTTCTACTCATACGCCATTTTCGAGCACCTAAAAGAGTGGCCTGCTTTCAACATTCCCCAGATCAGGATCGTCTTCAAACTGAGAAAAGACAGGTATCATTACATGGCCGTAGCGGATAATAGGCAAAGATTCATGCCACTTCCAGACGATAGATTACCTGGAAGAGGAAAAGAGCTAGCACCACCAGAAGCAGTTTTACTCGTGAATCCTATAGAGCCAGAGTTCAAGGGGGAGGTTGATGACAAGTATCAATATTCGAGTGACAACAAAGATCTGAAGGTGCATGGGTGGATAAGCTCCGGAAAAGAAACTGAAGCTCCCATGGGGTTCTGGGTAATTATACCTAGCAATGAATTCCGATCAGGGGGACCCGTTAAACAGAACCTCACCTCTCATGTGGGCCCCATCAGCCTCGCTATGTTCTTAAGTGCACATTATGCTGGCGAGGATCTAGTTCTAAAACTCAAACCGAATGAACCTTGGAAGAAAGTATTCGGACCAGTCTTTGTGTATCTGAACACTTTGTCGGATGATCAAGACATACTATGGCTCTGGGAGGATGCCAAAGATCAGATGACCAAGAAAGTTCAAAGTTGGCCTTATGATTTTCCAGCTTCAGAGGATTATCAGAAGTCTGACCAACGAGGCAGTGTTTGTGGCACACTACGGGCCCGAGACAGGTGTCAAAGTAACGATTATATATTGGCACGAGGCGCATATGTAGGACTGGCCCCACCTGGAGAAGCCGGATCATGGCAAAGAGAATGCAAGGGATACCAATTCTGGACAAGAGCAAACGAGGAAGGCTACTTCTCCATTAACAACGTATGTAGTGGGGATTATAATATCTATGCATGGGTTCCTGGTTTCATCGGAGAATACTGGAACAATGTTGTCGTCACCATCACCCCAGGTTGTGAAATAAATGTTGGAGACATTGTTTATGAGCCCCCAAGAGATGGTCCAACAATATGGGAGATAGGCATTCCCGATCGCACTGCTGCCGAATTCTATGTTCCTGAGCCGAATCCCATGTACATGAACAAGCTTTATGTCAACCATCCAGATAAGTTTAGGCAGTATGGCTTGTGGGAAAGATATGCAGAACTATATCCAAAGGAAGATTTGGTTTATACAGTTGGTGTTAGTGACTATGGGAAAGATTGGTTCTTTGCACAAGTCACCAGGAAGAAAGATGATGGAACTTACCAAGGAACTACATGGCAAATCAAGTTCAAGCTTGATAACGTGGTGGGAGGCGGGACGTATAAGTTAAGATTGGCACTTGCAACTGCATATGCAGCCGAATTACAGGTTAGAGTGAATGATCCGAAGCAAGAACCTCCTCTGTTCACGAGTGGCTTGATTGGAAAGGACAACACGATAGCTAGGCATGGAATCCATGGACTCTACAGGCTATACAGTGTTGACGTATCGGGTCGGGTTCTGATAGAAGGAGATAATACTTTGTATCTCACGCAGGCTATGGCCACTGGTCCTTTCGAAGGGATCATGTATGACTATATACGCTTTGAAAGCCCACAATCCTCTGTTTCCACTTCATAA 1905 0.4462 MSAQGVQLHIGETHVSMDNGIVKVYLSKPAGFVTRIQYNGVDNLLEVLNERDNRGTGTTGIFERVIGTSFRVVVENEEQVEISFTRMWDPSLKGKLSPLNIDKRYVMLRNSAGFYSYAIFEHLKEWPAFNIPQIRIVFKLRKDRYHYMAVADNRQRFMPLPDDRLPGRGKELAPPEAVLLVNPIEPEFKGEVDDKYQYSSDNKDLKVHGWISSGKETEAPMGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSAHYAGEDLVLKLKPNEPWKKVFGPVFVYLNTLSDDQDILWLWEDAKDQMTKKVQSWPYDFPASEDYQKSDQRGSVCGTLRARDRCQSNDYILARGAYVGLAPPGEAGSWQRECKGYQFWTRANEEGYFSINNVCSGDYNIYAWVPGFIGEYWNNVVVTITPGCEINVGDIVYEPPRDGPTIWEIGIPDRTAAEFYVPEPNPMYMNKLYVNHPDKFRQYGLWERYAELYPKEDLVYTVGVSDYGKDWFFAQVTRKKDDGTYQGTTWQIKFKLDNVVGGGTYKLRLALATAYAAELQVRVNDPKQEPPLFTSGLIGKDNTIARHGIHGLYRLYSVDVSGRVLIEGDNTLYLTQAMATGPFEGIMYDYIRFESPQSSVSTS 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0462 634 CDD RGL4_M 327 426 IPR029413 -
Lele01g0462 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 628 - -
Lele01g0462 634 CDD RGL4_N 13 294 - -
Lele01g0462 634 Gene3D - 4 266 IPR014718 GO:0030246
Lele01g0462 634 Gene3D - 324 423 - -
Lele01g0462 634 Pfam Polysaccharide lyase family 4, domain III 436 623 IPR029411 -
Lele01g0462 634 CDD RGL4_C 438 625 - -
Lele01g0462 634 Gene3D - 434 624 - -
Lele01g0462 634 SUPERFAMILY Galactose-binding domain-like 433 625 IPR008979 -
Lele01g0462 634 SUPERFAMILY Starch-binding domain-like 370 425 IPR013784 GO:0030246
Lele01g0462 634 FunFam Rhamnogalacturonate lyase B 324 423 - -
Lele01g0462 634 Pfam Rhamnogalacturonate lyase family 7 192 IPR010325 -
Lele01g0462 634 Pfam Polysaccharide lyase family 4, domain II 349 422 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0462 Lele-ChrLele01 2717516 2720883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0462 1 627 Polysaccharide Lyase AT1G09890 64.992 0.0 859