Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0456 ATGTCAGCCGTTAATCCACAACCTCTGCAGGCGCGTCCGCTCGAGAAACAAGTGCGGGGTCCAGTACCGATAGAGGACGACGACGGTGACTCTGAGGATGGCGGTGCTAGTGGTCATGCCATGTATGACTTGGAAGAGGGAAATGTTAATTCAGTGGCTGTGCCAAACCATGTAGGAGTTGTTACGACGTCACGAACTAGTGAGCTCACTCTTTCTTTCGAGGGTGAAGTTTATGTGTTTCCTGCGGTGCCACCGGAGAAGGTGCAAGCTGTTTTGCTGCTTTTGGGAGCACGCGATGTGCCTGCATGTATTCCTTTTGTTGAAGTACAACCATTCGATGAAAGCAGCAAGGGCATAGGTGATACTCCAAGGCAGTTGAACCTTTCAAGAAGAATAGCCTCCTTGGTTAGGTTTCGTGAAAAACGCAAGGAAAGATGTTTCGACAAGAAGATTAGGTACTCTGTGAGAAAAGAGGTGGCTCAAAGGATGCATCGCAAGAATGGGCAATTTGCATCCTTCAAAGGAAGTCCTGGTTCATCTAGTTTGGATCATTCTACAGAAAGCTTTCATCAGGATGGTGCCCATTCTGGAACTTTACGTAGATGTCAACATTGTGGTGTTAATGAAAATAATACTCCTGCAATGCGCCGTGGTCCAGCTGGACCAAGGACTCTATGTAATGCATGTGGCCTTATGTGGGCAAATAAGGGAACACTCAGAGATCTTAATAAGGGAGGAAGAAATCTTTCTGTTGAGCAAAGGGAGCTGGAGACTCCTCTTGAGGTCAAACCTATTATCCTGGAAGGAGAATTGCTTGGCGTCCATGGCATGGAAGGAATTTCTGAAGATCCTTCCAGTGCCATTGCTGAAAGATCTAACAATCGTGCTGTCAACCCCAGTGACGAGGAATTGCGGTCTGGCGAACACTTATCAAATTCACTGTCAGCAGGCTTTGTGCATGCTTCAGCAAATGATGAGCAGGAACATCTGGCTGAGCTTTCCAATTCTTCCGACAAAGATATTGACATTCCCGGAAACTTCGATTAG 1047 0.468 MSAVNPQPLQARPLEKQVRGPVPIEDDDGDSEDGGASGHAMYDLEEGNVNSVAVPNHVGVVTTSRTSELTLSFEGEVYVFPAVPPEKVQAVLLLLGARDVPACIPFVEVQPFDESSKGIGDTPRQLNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASFKGSPGSSSLDHSTESFHQDGAHSGTLRRCQHCGVNENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLNKGGRNLSVEQRELETPLEVKPIILEGELLGVHGMEGISEDPSSAIAERSNNRAVNPSDEELRSGEHLSNSLSAGFVHASANDEQEHLAELSNSSDKDIDIPGNFD 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0456 348 SMART tify_2 62 97 IPR010399 -
Lele01g0456 348 CDD ZnF_GATA 201 245 IPR000679 GO:0006355|GO:0043565
Lele01g0456 348 MobiDBLite consensus disorder prediction 169 195 - -
Lele01g0456 348 Pfam CCT motif 131 172 IPR010402 GO:0005515
Lele01g0456 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 247 - -
Lele01g0456 348 Gene3D - 195 257 IPR013088 GO:0006355|GO:0008270
Lele01g0456 348 MobiDBLite consensus disorder prediction 278 348 - -
Lele01g0456 348 MobiDBLite consensus disorder prediction 172 193 - -
Lele01g0456 348 Pfam tify domain 65 96 IPR010399 -
Lele01g0456 348 PANTHER GATA TRANSCRIPTION FACTOR 28 4 341 IPR045280 GO:0006355
Lele01g0456 348 ProSitePatterns GATA-type zinc finger domain. 202 229 IPR000679 GO:0006355|GO:0043565
Lele01g0456 348 ProSiteProfiles CCT domain profile. 131 173 IPR010402 GO:0005515
Lele01g0456 348 SMART GATA_3 196 249 IPR000679 GO:0006355|GO:0043565
Lele01g0456 348 MobiDBLite consensus disorder prediction 1 39 - -
Lele01g0456 348 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Lele01g0456 348 ProSiteProfiles GATA-type zinc finger domain profile. 196 254 IPR000679 GO:0006355|GO:0043565
Lele01g0456 348 Pfam GATA zinc finger 202 238 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0456 Lele-ChrLele01 2659773 2662921 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0456 28 262 Tify Gene Family AT1G51600 47.104 1.18e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele01g0456 CCT 2.5e-13 CL0281