Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0454 ATGTACGGACAACTCCCATCAATGAATGTCACCAATCGGATCAGCACCGGAGAAGATGAAGATGGCGCTGGCATTGGCGCCGAATCAATTGACAATCACAACATCCGTTACGAAACGCAAGCCCTCGATGATAGCAGTGGTGGAGTCGGGGGCGTTGTGGAGGATGTGAACTCTGATACCGTATATGTTTCCGGCAGTGGTTCTGAATTGTCCATCCCGCACGAGGATCCTAGCCAACTTACGTTGTCATTTCGTGGTCAAGTATATGTTTTTGACTCTGTTACCCCTGATAAGGTGCAAGCGGTATTGTTACTGTTGGGTGGATCTGAAATACCACCGGGTTCGCAATGTGAGGATATAGCCCCTCTAAATGAGAGGGGTGCGATGGATTACCCTGGAAGATGTAGTCAGCCACACCGAGCAGCCTCTTTAAGCAGGTTTCGTCAGAAGAGAAAAGAGAGATGCTTTGACAAGAAAGTTAGATATAGCGTGCGTCAAGAAGTCGCTCTCAGGATGCACCGTAATAAGGGTCAATTTACTTCTTCTAAGAAGCAAGAAGGAGCTAATAGTTTGGGAAGAGTCCAAGAGTCAGGGCAGGATGACAATCAATCAGAAACCTCGTGCACACATTGTGGCACCAGTTCAAAATCCACCCCAATGATGAGGCGTGGGCCATCAGGACCAAGGTCACTGTGCAATGCTTGTGGACTTTTTTGGGCAAATAGGGGTACGTTGAGGGACTTATCCAAGAAGAACCACGAACATTCTCTTTTACCAGCTGAGCAGGTTGAACGGGATGATTCTCATTCTCGGACTGCTAACCCTGCACGTAACAATCTTGGGGCTTTCTCTGATAATGATAAGCCGGCATAG 873 0.4788 MYGQLPSMNVTNRISTGEDEDGAGIGAESIDNHNIRYETQALDDSSGGVGGVVEDVNSDTVYVSGSGSELSIPHEDPSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGSEIPPGSQCEDIAPLNERGAMDYPGRCSQPHRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQEGANSLGRVQESGQDDNQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKKNHEHSLLPAEQVERDDSHSRTANPARNNLGAFSDNDKPA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0454 290 ProSitePatterns GATA-type zinc finger domain. 208 235 IPR000679 GO:0006355|GO:0043565
Lele01g0454 290 MobiDBLite consensus disorder prediction 258 290 - -
Lele01g0454 290 MobiDBLite consensus disorder prediction 173 227 - -
Lele01g0454 290 MobiDBLite consensus disorder prediction 1 27 - -
Lele01g0454 290 Gene3D - 198 257 IPR013088 GO:0006355|GO:0008270
Lele01g0454 290 PANTHER GATA TRANSCRIPTION FACTOR 28 25 270 IPR045280 GO:0006355
Lele01g0454 290 SMART tify_2 73 108 IPR010399 -
Lele01g0454 290 MobiDBLite consensus disorder prediction 181 221 - -
Lele01g0454 290 ProSiteProfiles GATA-type zinc finger domain profile. 202 261 IPR000679 GO:0006355|GO:0043565
Lele01g0454 290 Pfam GATA zinc finger 208 244 IPR000679 GO:0006355|GO:0043565
Lele01g0454 290 SMART GATA_3 202 255 IPR000679 GO:0006355|GO:0043565
Lele01g0454 290 MobiDBLite consensus disorder prediction 1 16 - -
Lele01g0454 290 Pfam tify domain 76 107 IPR010399 -
Lele01g0454 290 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Lele01g0454 290 MobiDBLite consensus disorder prediction 258 272 - -
Lele01g0454 290 CDD ZnF_GATA 207 252 IPR000679 GO:0006355|GO:0043565
Lele01g0454 290 Pfam CCT motif 140 182 IPR010402 GO:0005515
Lele01g0454 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 204 257 - -
Lele01g0454 290 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0454 Lele-ChrLele01 2650447 2657030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0454 1 257 Tify Gene Family AT4G24470 55.472 2.43e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele01g0454 CCT 3.6e-15 CL0281