Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0424 ATGGATGTATCCTGTATAGCTAGTTTTGGAGGAGCAGAAAATGCTTGCAAAACCGCTGGTTTGAAGGATATTCATCCCCGTCACAGTCAGTTTTGAGAGCCACGAATTCAGGTCGACATGTTGGTGAGCATTTTGTGTACGTTATATGATCGGTGGAAAGCATTTATGACGGGGTCTAACACATCGGTTGCATTTGTGGCTGTCAGTAACGCTGCTCCGAACCGTGAATTTGTTGTTATATCATATGTCTCCCATTTCTACGAGTCTGCTATGCGGTTGGGCCATCGAACGCGTTTTGGATTGATTATAGGGGAGAAGGAGATGGGACGATGCCAATGGACTTGTCGGCTTGTGGGAAACAATGATAACAAGTTTCATGTGATTATGGAATTTGAGGAGCAAGATCAGGAGCACGAAGAGGCAGAGGAAGAAATGGGGATCCCCGTTCCCCCGGCGGGTTACGACTCATCTCGCTCCAAAACAGGCGCTGCCTTCGGAACCGAGGGAGGTGCATCCGCCCTGACCGGGGGCAGCAAGGGTGGTCCAACGGGAACAGTCAGGTACAGAGAGTGTCAGAAGAATCACGCCGTCAGCATCGGCGGCCACGCCGTGGACGGTTGCGGTGAGTTTCTAGCGGCGGGAGAGGAAGGCACACTCGACGCTCTCAAATGCGCCGCCTGCAACTGTCACCGCAACTTTCACCGCAAGGAGATCGAGGGAGAAACTAGCTCCTTTCACATGCCGCAGCAGCACCACCCCCAGTACCCACATCAATTTCCCCCTTACTACCGTGGGCCGCCGCCGCCAGGCGTAGGATACCTCCACCACCACCTGACAAATCCCGCGATGGCACATCACCAGCCTCTGGCTCTACCAGCTGCCGCGGCATCCGGCGGGGGACTGAGTAGAGAAGAGGAAGACATGTCCAATCCGAGTAGCAGCGGAGGTGGAGGTTTCGGCGGTGGAGGGAGCGTTAGTGAAAGGAGGAAACGGTTTCGAACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGCATTTTCGGAAAAGGTGGGGTGGAGAATCCAGAAGCATGACGAAGCAACAGTGGAACAATTCTGTGCGGAGACCGGCGTCAAGAGACAGGAAGATGAATCCATGGGAATTCAACGTGCATAG 1158 0.5389 MDVSCIASFGGAENACKTAGLKDIHPRHSQFXEPRIQVDMLVSILCTLYDRWKAFMTGSNTSVAFVAVSNAAPNREFVVISYVSHFYESAMRLGHRTRFGLIIGEKEMGRCQWTCRLVGNNDNKFHVIMEFEEQDQEHEEAEEEMGIPVPPAGYDSSRSKTGAAFGTEGGASALTGGSKGGPTGTVRYRECQKNHAVSIGGHAVDGCGEFLAAGEEGTLDALKCAACNCHRNFHRKEIEGETSSFHMPQQHHPQYPHQFPPYYRGPPPPGVGYLHHHLTNPAMAHHQPLALPAAAASGGGLSREEEDMSNPSSSGGGGFGGGGSVSERRKRFRTKFTQEQKEKMLAFSEKVGWRIQKHDEATVEQFCAETGVKRQEDESMGIQRA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0424 385 Pfam ZF-HD protein dimerisation region 186 238 IPR006456 -
Lele01g0424 385 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 329 375 IPR006455 -
Lele01g0424 385 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 187 238 IPR006456 -
Lele01g0424 385 SUPERFAMILY Homeodomain-like 315 375 IPR009057 -
Lele01g0424 385 MobiDBLite consensus disorder prediction 245 337 - -
Lele01g0424 385 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 188 237 IPR006456 -
Lele01g0424 385 MobiDBLite consensus disorder prediction 135 178 - -
Lele01g0424 385 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 161 375 - -
Lele01g0424 385 Gene3D - 319 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0424 Lele-ChrLele01 2480028 2485699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0424 129 375 ZF-HD Transcription Factor Family AT4G24660 50.602 7.50e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele01g0424 ZF-HD_dimer 5.7e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0424 01 2480028 2485699 Lele01g0424 01 2480028 2485699 ECH
Lele01g0424 01 2480028 2485699 Lele03g0437 03 2485318 2486844 hybridization
Lele01g0424 01 2480028 2485699 Lele04g0429 04 2532293 2535917 hybridization