Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0414 ATGGCAATGGCGCTATTTCGTATCTTCGGCCTCCCGTCAACAGCCAACCTCTCCGCAGAACACCAACTTCGCCCACTCTCTTCTCTCCATAATTTTCCCCATCCTTCCACCGGCATTCTCTCGTTTTGTCGCTCGCCTTCCTCGTTCCATGTTCTACGTCTGTCCCTTGCGCATCCCTCAAACTATACAACCAAAGAAATTTCTCATTTTCTACCACCATTTGCCACTACATCCCAAGAACAAGCGCTTAGTTCCTCTCCTTCAAATGTTTCCGATGACAGCCAACCAACTGAGGCACAAGCTGAAGAATTCTCTCGAACCAGGTTGGTTGCTCAGAACCTACCTTGGACTTGCACTCCTGAAGACGTTCGTTCTTTGTTCGAGAGGCATGGAACAGTCCTAGACGTTGAGTTATCGATGTATAATAAGACTAGAAACAGGGGTTTGGCGTTCGTTGAAATGGGTTCGGAAGAAGAGGCTCTTGCTGCTTTGAATAGTCTCGAATCGTATGAATATGAAGGGCGTGCACTGAGACTCGCATATGCTCGGCCGAAAAAGAAGAAAGATCCACCTCCTGTGCAGCAGAAGACAGTAACATTTAACATATTTGTCGCAAATTTGTCCTATGAAGCGAGGGCTAAGGATGTCAGGGAGTTTTTTGATTCAGGAAGTGGCAGTGTTGTTTCTGCCGAGGTTATATTTCATGACAACCCTAGAAAGTCCGCTGGTTATGGATTTGTATCATTCAAGTCTAAGAAAGAAGCTGATGCTGCCCTTACTGAGTTCCAAGGGAAGATTTTTATGGGAAGACCAATCAGGGTGGCACGTAGTAAGCAGTTTGTTAAACAACCAGTAGAGGAGAGTGCAAGGTCTGAAGATACATCTTCTGAGACCAGCGTGAATGGGGTAGAAGCAGATGAAGCCGATTGA 930 0.4624 MAMALFRIFGLPSTANLSAEHQLRPLSSLHNFPHPSTGILSFCRSPSSFHVLRLSLAHPSNYTTKEISHFLPPFATTSQEQALSSSPSNVSDDSQPTEAQAEEFSRTRLVAQNLPWTCTPEDVRSLFERHGTVLDVELSMYNKTRNRGLAFVEMGSEEEALAALNSLESYEYEGRALRLAYARPKKKKDPPPVQQKTVTFNIFVANLSYEARAKDVREFFDSGSGSVVSAEVIFHDNPRKSAGYGFVSFKSKKEADAALTEFQGKIFMGRPIRVARSKQFVKQPVEESARSEDTSSETSVNGVEADEAD 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0414 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 279 IPR000504 GO:0003723
Lele01g0414 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 273 IPR000504 GO:0003723
Lele01g0414 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 178 IPR000504 GO:0003723
Lele01g0414 309 PANTHER OS02G0815200 PROTEIN 39 278 - -
Lele01g0414 309 MobiDBLite consensus disorder prediction 81 103 - -
Lele01g0414 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Lele01g0414 309 Gene3D - 73 187 IPR012677 -
Lele01g0414 309 MobiDBLite consensus disorder prediction 279 309 - -
Lele01g0414 309 Gene3D - 188 292 IPR012677 -
Lele01g0414 309 SMART rrm1_1 108 180 IPR000504 GO:0003723
Lele01g0414 309 SMART rrm1_1 201 275 IPR000504 GO:0003723
Lele01g0414 309 CDD RRM_SF 202 274 - -
Lele01g0414 309 SUPERFAMILY RNA-binding domain, RBD 107 276 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0414 Lele-ChrLele01 2421629 2423326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0414 107 279 Eukaryotic Initiation Factors Gene Family AT3G16380 31.522 3.98e-16 77.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0414 01 2421629 2423326 Lele25g0383 25 2331439 2333437 CCT
Lele01g0414 01 2421629 2423326 Lele26g0399 26 2407595 2409186 CCT
Lele01g0414 01 2421629 2423326 Lele27g1700 27 22378399 22380431 CCT
Lele01g0414 01 2421629 2423326 Lele28g0393 28 2413806 2415460 CCT
Lele01g0414 01 2421629 2423326 Lele01g0414 01 2421629 2423326 ECH
Lele01g0414 01 2421629 2423326 Lele03g0426 03 2425560 2427258 hybridization
Lele01g0414 01 2421629 2423326 Lele04g0418 04 2478490 2480719 hybridization