Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0408 ATGGCTTTCCACTGCTGCCTGAGCAGCACCCCCTTCCAAAGTCTTCAACGTGCCACGCTTTCTCTTTCATCTTCCTCACGCCTTGTTTTCCGAACAGCCGATATAATTCCAGTTAATCCCCTTTCTGGCCGTAGCTACTTACTCAAACTACCCTTGCAACATCTCACTAGAGTTCTTTCAACCTCTGCTGCTGTCCAAACATCTCCCGCCACATCGACGTCAACAACTAACATGACCCCTGATGACAAGGGTGGGAAAGCTCCGTGGAAAGCAGCTATAGACTTCAAGTGGATAAAGGATAATAAGGAAGCAGTCGCCGCCAACATAAAGAGTCGAAACTCTAATGCTAATTTAGAGCTCGTGCTTGAGCTATACGAGAAAACTTTTAATCTTCAGAAGGAAGTTGAGAGGGTTCGTGGGGAAAGGAATGCGGTAGCAAACAAGATGAAAGGAAAAATGGAACAATCAGAGCGTCAGAGACTCATTGAGGAAGGAAAAAGTCTGAAGGATCAGCTAACTGCCTTGGAGGAAGAGCTTACCAAGCTTACCGATGAGCTCCAACAGGAAGCACAATGTATACCGAATATGACTCATCCAGATGTTCCGATAGGAGGAGAAGGTAGTTCAAGAATAAGAAAGATGGTTGGTAGTCCTCGCAAATTTAGCTTTGTTCCCAAGGATCATCTGCAACTTGGAAAGGAACTTGATCTTTTTGATTTTGATGCTGCCGCTGAGGTCAGTGGTTCAAAGTTCTATTACCTGAAGAATGAAGCGGTTTTGTTGGAGATGGGTCTTGTAAATTGGACACTCTCAGAAGTAATGAAGAGAGGCTTTACCCCATTAACAACTCCTGAAATCGTTCGCTCCTCTGTTGTTGAAAAATGTGGATTTCAACCGCGTGGAACAAATACCCAGGTATATTCCATTGATGATAGTGATCAATGCCTCATAGGCACTGCAGAAATTCCTGTTGCGGGCCTTCACATGGATTCTATACTTGCTGAGTCATCGTTACCGTTGAAATACATTGCGTTTTCTCATTGTTTCCGAACTGAGGCTGGTGCTGCTGGTACTGCGACAAGGGGTCTTTACCGAGTTCACCAGTTCAGCAAGGTTGAGACTTTTATATTTTGCCGCCCTGAGGAGAGTGAACGCTACCATGAGGAGCTTATTACGATGGAGGAAGACCTCTTCTTATCCCTAGGTTTACATTATAAAACTTTGGATATGGCCTCTGAAGATTTAGGTGCCCCTGCTCAACGAAAATTTGATGTGGAAGCATGGATGCCTGGCTTAGAACGGTTTGGTGAGATATCAAGTGCATCAAACTGCACAGATTATCAGAGCCGTCGATTAGGAATCCGGTATCGTCCATCAGGGCCACCAACCACAAGCACAAAGAAAGCTAAAGGCAACCTTGCTCCGCCACAATTTGCTCACACATTAAATGCAACCGCTTGTGCAGTACCTCGGATGATTATTTGTTTGCTCGAGAATTACCAGCAAGAAGATGGATCTGTTGTCATCCCTGAGCCCCTGAGGCCCTTCGTGGGTGGCCTTGATATCATATCCCCAAAATCCGGATAA 1587 0.4531 MAFHCCLSSTPFQSLQRATLSLSSSSRLVFRTADIIPVNPLSGRSYLLKLPLQHLTRVLSTSAAVQTSPATSTSTTNMTPDDKGGKAPWKAAIDFKWIKDNKEAVAANIKSRNSNANLELVLELYEKTFNLQKEVERVRGERNAVANKMKGKMEQSERQRLIEEGKSLKDQLTALEEELTKLTDELQQEAQCIPNMTHPDVPIGGEGSSRIRKMVGSPRKFSFVPKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMGLVNWTLSEVMKRGFTPLTTPEIVRSSVVEKCGFQPRGTNTQVYSIDDSDQCLIGTAEIPVAGLHMDSILAESSLPLKYIAFSHCFRTEAGAAGTATRGLYRVHQFSKVETFIFCRPEESERYHEELITMEEDLFLSLGLHYKTLDMASEDLGAPAQRKFDVEAWMPGLERFGEISSASNCTDYQSRRLGIRYRPSGPPTTSTKKAKGNLAPPQFAHTLNATACAVPRMIICLLENYQQEDGSVVIPEPLRPFVGGLDIISPKSG 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0408 528 FunFam Serine--tRNA ligase 195 527 - -
Lele01g0408 528 Coils Coil 158 192 - -
Lele01g0408 528 Pfam Seryl-tRNA synthetase N-terminal domain 93 196 IPR015866 -
Lele01g0408 528 MobiDBLite consensus disorder prediction 64 87 - -
Lele01g0408 528 PIRSF Ser-tRNA_ligase 92 526 IPR002317 GO:0000166|GO:0004828|GO:0005524|GO:0006434
Lele01g0408 528 SUPERFAMILY Class II aaRS and biotin synthetases 209 518 IPR045864 -
Lele01g0408 528 FunFam Seryl-tRNA synthetase 93 194 - -
Lele01g0408 528 Gene3D - 93 194 IPR042103 -
Lele01g0408 528 TIGRFAM serS: serine--tRNA ligase 93 517 IPR002317 GO:0000166|GO:0004828|GO:0005524|GO:0006434
Lele01g0408 528 CDD SerRS_core 210 516 IPR033729 -
Lele01g0408 528 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 227 510 IPR006195 -
Lele01g0408 528 Gene3D Bira Bifunctional Protein; Domain 2 195 527 IPR045864 -
Lele01g0408 528 PRINTS Seryl-tRNA synthetase signature 404 417 IPR002317 GO:0000166|GO:0004828|GO:0005524|GO:0006434
Lele01g0408 528 PRINTS Seryl-tRNA synthetase signature 439 455 IPR002317 GO:0000166|GO:0004828|GO:0005524|GO:0006434
Lele01g0408 528 PRINTS Seryl-tRNA synthetase signature 364 377 IPR002317 GO:0000166|GO:0004828|GO:0005524|GO:0006434
Lele01g0408 528 PRINTS Seryl-tRNA synthetase signature 421 437 IPR002317 GO:0000166|GO:0004828|GO:0005524|GO:0006434
Lele01g0408 528 PRINTS Seryl-tRNA synthetase signature 352 364 IPR002317 GO:0000166|GO:0004828|GO:0005524|GO:0006434
Lele01g0408 528 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 311 500 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lele01g0408 528 MobiDBLite consensus disorder prediction 64 81 - -
Lele01g0408 528 PANTHER SERYL-TRNA SYNTHETASE 93 525 IPR002317 GO:0000166|GO:0004828|GO:0005524|GO:0006434
Lele01g0408 528 SUPERFAMILY tRNA-binding arm 93 202 IPR010978 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0408 Lele-ChrLele01 2396832 2400380 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0408 01 2396832 2400380 Lele28g0387 28 2384780 2385790 CCT
Lele01g0408 01 2396832 2400380 Lele03g0420 03 2401533 2405058 hybridization
Lele01g0408 01 2396832 2400380 Lele04g0414 04 2452428 2460832 hybridization