Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0397 ATGGCTTACCCGCATTACCGATCCCAGTTCGGCGACACCACATCCACCAAAGTGTTTGTCGGAGGACTCGCTTGGGAGACTCCCACCGAAGAAATGCGTACATATTTCGAGCAGTTCGGAGACATTCTCGAGGCTGTTATAATCACCGATAAGAAGACAGGAAAATCTAAAGGATATGGATTCGTAACATTCCGTGATCCTGAATCAGCCAGAAGGGCTTGCGCTGATCCAAACCCAATAATAGATGGAAGAAGAGCAAACTGTAATATTGCTTCTCTGGGACGACCTCGACCTTCCCCGCCGCGAGGGAGGAGTACATTCCAAGGTGGAAGCGCATCACAGAGTGCAGCATCATATGGTGGCGCCCCAGCAGCCGTACCGCGGGCGCCTCCACCGCCCCCTCCGGAGCCGGTGGGGGTTGGGATGATGTACCCGCCATATGGCTACTCTCCCTATTCTCTTGATTACGGGTACCATCAAGCGGTAATGTACAACCCCCATCAGATTCAGCAACCACAATACTACCAGCAAGTTTATGGAGCTTCATCATCGGGAGTGACTCCCCCGTATTACTATGGCGGGTACCCTGTGCAGCCACCCAGGGCCTCTTATTCTACGCCCCAGCCCCAGCGCCTGCCACCTGGGCCCTCCTATCTGTACTACCCTTACCCTCCTTCACCTTCACCCGCACCCATGGATCTCTCCTTCTCCGCCTATCGTCCCCCTCGACAACCAACACTGTTAGGGCAGCCCTTCGTCCCTTCCTCTTCTACTGATTCACAGTCGACACAGGCTCAGCAGCAGCGTACCTCCTCCGAGACGGCGGCTTCATCGGAAAGTCCGAGTACTCAAGGGAAAAACTAA 864 0.5463 MAYPHYRSQFGDTTSTKVFVGGLAWETPTEEMRTYFEQFGDILEAVIITDKKTGKSKGYGFVTFRDPESARRACADPNPIIDGRRANCNIASLGRPRPSPPRGRSTFQGGSASQSAASYGGAPAAVPRAPPPPPPEPVGVGMMYPPYGYSPYSLDYGYHQAVMYNPHQIQQPQYYQQVYGASSSGVTPPYYYGGYPVQPPRASYSTPQPQRLPPGPSYLYYPYPPSPSPAPMDLSFSAYRPPRQPTLLGQPFVPSSSTDSQSTQAQQQRTSSETAASSESPSTQGKN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0397 287 CDD RRM_RBM24_RBM38_like 16 91 - -
Lele01g0397 287 MobiDBLite consensus disorder prediction 201 220 - -
Lele01g0397 287 MobiDBLite consensus disorder prediction 91 133 - -
Lele01g0397 287 SUPERFAMILY RNA-binding domain, RBD 8 116 IPR035979 GO:0003676
Lele01g0397 287 MobiDBLite consensus disorder prediction 104 118 - -
Lele01g0397 287 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Lele01g0397 287 SMART rrm1_1 17 89 IPR000504 GO:0003723
Lele01g0397 287 PANTHER BOULE-RELATED 6 272 IPR037366 -
Lele01g0397 287 MobiDBLite consensus disorder prediction 202 220 - -
Lele01g0397 287 MobiDBLite consensus disorder prediction 231 287 - -
Lele01g0397 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Lele01g0397 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Lele01g0397 287 MobiDBLite consensus disorder prediction 249 287 - -
Lele01g0397 287 Gene3D - 3 111 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0397 Lele-ChrLele01 2332014 2334879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0397 12 92 C2H2 Transcription Factor Family AT2G19380 40.741 4.39e-16 76.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0342 25 2089314 2094486 Lele01g0397 01 2332014 2334879 CCT
Lele01g0397 01 2332014 2334879 Lele01g0397 01 2332014 2334879 ECH
Lele01g0397 01 2332014 2334879 Lele03g0407 03 2340990 2343932 hybridization
Lele01g0397 01 2332014 2334879 Lele04g0402 04 2400238 2403376 hybridization