LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele01g0377	ATGACTTTAGCCAACGAAGTTAGTGTCGTGAAGATGACGAACCAGAATCTGGTGGTTCCTGATGTAAAATCACTTATTAACACCATTATTGAGGTGGCCGTGTCCATTTCCAACTCGCCTATGCTTCCCAGCACGGCAGTGCCAGAATCTCTGGTCATGCTTGGTGGGATTTTTGGGAAAAAGATAATGAAGAGGCTTGACGATGGAGGAGGAAAAGGTGGAGCCAAAGTCAATGCCTGGATTGATTCAATGAGAGCTTCCTCTCCCACACGAGTCAAATCCTCCATTTCTGCTTCTCAGAACCAACACTTGAGTTCTTGGGGTCTTCATCATCCTTCGGCGATCAACATGTTTGATCAGATAATCGATAACTCAAAAGATAAGCAAATAGTAATCTTCCTTGACTACGATGGAACTCTCTCCCCAATTGTTGCAGACCCTGATAAAGCATTCATGACTAAGAAGATGAGAGCAACGGTAAAGGATATAGCAAAACACTTTCCCACGGCCATCGTGAGTGGAAGGCGGAGAGACAAGGTTTACAAGTTTGTGAGATTAGCAGAGCTGTACTACGCAGGCAGCCATGGCATGGACATCAAAGGACCGACAAAGACCCAAGGATCTAAGAAAGGTAATCAAACGGCCCCCTTCCAACCTGCAAGCCAATTCTTGCCCATGATCAATGAGGTTTACAAGATCTTGTTGGAGAAAACAAAATCCGTGGAAGGGGCTAAGGTTGAGAATAACAAGTTTTGCTTGTCCGTGCACTTCCGTTGCGTTGACGAAAAGAGCTGGGGTGCACTGGCGGAGCAAGTTCGACTAGTGATGAATCAGTACCCAAAACTTAAGCTGACGGAAGGCAGAAAAGTGCTCGAGATCCGACCAACCATCAAATGGGACAAGGGCAAAGCTCTTGAATTTTTGTTACATTCGCTTGGATTCGCCAATTCCAAGGATGTCTTCCCCATCTACATCGGCGATGACCGGACTGACGAGGATGCTTTTAAGGTGTTACGTAGGAGAGGCGAAGGGACCGGAATTCTCGTATCTCAAGTTCCCAAAGAAACAGAAGCTTCCTACACTTTACAAGACCCATCAGAGGTTGAGCAATTTTTGCGGCGTTTGGGAGAGTGGAAGAGGAGAGTAACAATGAGAGTTGAGGAGTAG	1167	0.4619	MTLANEVSVVKMTNQNLVVPDVKSLINTIIEVAVSISNSPMLPSTAVPESLVMLGGIFGKKIMKRLDDGGGKGGAKVNAWIDSMRASSPTRVKSSISASQNQHLSSWGLHHPSAINMFDQIIDNSKDKQIVIFLDYDGTLSPIVADPDKAFMTKKMRATVKDIAKHFPTAIVSGRRRDKVYKFVRLAELYYAGSHGMDIKGPTKTQGSKKGNQTAPFQPASQFLPMINEVYKILLEKTKSVEGAKVENNKFCLSVHFRCVDEKSWGALAEQVRLVMNQYPKLKLTEGRKVLEIRPTIKWDKGKALEFLLHSLGFANSKDVFPIYIGDDRTDEDAFKVLRRRGEGTGILVSQVPKETEASYTLQDPSEVEQFLRRLGEWKRRVTMRVEE	388

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele01g0377	388	Pfam	Trehalose-phosphatase	133	366	IPR003337	GO:0003824\|GO:0005992
	Lele01g0377	388	FunFam	Trehalose 6-phosphate phosphatase	130	216	-	-
	Lele01g0377	388	FunFam	Trehalose 6-phosphate phosphatase	220	296	-	-
	Lele01g0377	388	FunFam	Trehalose 6-phosphate phosphatase	226	385	-	-
	Lele01g0377	388	SUPERFAMILY	HAD-like	131	380	IPR036412	-
	Lele01g0377	388	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	132	341	IPR006379	-
	Lele01g0377	388	TIGRFAM	T6PP: trehalose-phosphatase	128	375	IPR003337	GO:0003824\|GO:0005992
	Lele01g0377	388	Gene3D	-	220	387	IPR023214	-
	Lele01g0377	388	Gene3D	-	130	215	IPR023214	-
	Lele01g0377	388	CDD	HAD_TPP	131	368	-	-
	Lele01g0377	388	PANTHER	TREHALOSE 6-PHOSPHATE PHOSPHATASE	67	382	IPR044651	GO:0004805\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele01g0377	Lele-ChrLele01	2202457	2204739	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele01g0377	121	377	Trehalose Biosynthesis Gene Families	AT1G06410	27.106	1.69e-10	60.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele01g0377	01	2202457	2204739	Lele25g0346	25	2118382	2119446	CCT
	Lele01g0377	01	2202457	2204739	Lele26g0363	26	2192880	2193561	CCT
	Lele01g0377	01	2202457	2204739	Lele27g1735	27	22626956	22627645	CCT
	Lele01g0377	01	2202457	2204739	Lele28g0362	28	2215252	2216477	CCT
	Lele01g0377	01	2202457	2204739	Lele01g0377	01	2202457	2204739	ECH
	Lele01g0377	01	2202457	2204739	Lele03g0384	03	2225097	2227367	hybridization
	Lele01g0377	01	2202457	2204739	Lele04g0382	04	2274563	2276549	hybridization