Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0376 ATGGCAGCTAACATGGACTTGTACAGTGATCTGCAAATTCCGCCGCATCCCTTCAACGGTGAGCTTATGGAAGCACTCGAGCCTTTTATGAAAAGTGCCCCTGCAACGTCCTCACCGTCTCCGTACTCGCTCTCATCCTCTGCTTCGAATCTATTCCTACCTTCTCAACCACCCTCTTGCAACTTCTTCCTTCCCTATCCTTCGGTCCCTCTCCAGCCCAATTTGTTTTCAGATGTTTGCTGGCCATCGATCACCCATGTATTTGCCGACGGGTTATTCAACAACCAAAACTTGATTGGTTTCGGGCAGCCAACTCCTCTTGGGTTCAACAACCATAAGTCTCAGACTAACCATATTCAACCTCAGATCCTTCCCCAGAATCCCCAGAACATGACCTGGCAGCAAAATACCCTCAGCGTCTTGAGCCCCAAGACTGTTCCCATGAAGCAAATGGGTGCGCCTTCTAAGCCAAACAAGCTGTTCAGAGGGGTCAGGCAGCGGCATTGGGGAAAATGGGTCGCCGAGATCCGACTTCCGAAGAACCGGACCCGTCTCTGGCTTGGCACCTTCGATACTGCGGAAGAAGCTGCCCTCGCCTACGACAGGGCCGCTTACAAGCTCAGAGGTGACTCCGCCAGGCTTAACTTCCCCAACCTCCGACACCTAGGTTCCTGTGTGGAGGGCGAATTCGAGGAGTTCAAGCCTCTACATTCCTCCGTAGATGCAAAGCTTCAAGCAATTTGCGAAGGTATGGCTGATATGCAGAAGCAGGGGAAGTCGGAGAGACCAAATAGGTCTTCAGCACGGTCGAAATCGGGTTCCAAGGCCGCTCAGCCGCAGACGGTAACTCTCTTGGATGAGCAGCCGGTAGCCGGCGAAGCTGATTTGAAGGGAGCGGAGAACTCTGACAACAAGGTGGAGACTTCCTTGTCTCCGGTGATGACTGAGAGTGGAGAGTCTGGTGGTTCATCTCCTCTGTTGGATTTGACATTCGACGATGCCAGTGAGCCTCAGTGGGAAAGTATGGCGGACATTTTTAATCTGCAGAAGTACCCTTCTGAGATCGACTGGGCATCATTATGA 1083 0.5226 MAANMDLYSDLQIPPHPFNGELMEALEPFMKSAPATSSPSPYSLSSSASNLFLPSQPPSCNFFLPYPSVPLQPNLFSDVCWPSITHVFADGLFNNQNLIGFGQPTPLGFNNHKSQTNHIQPQILPQNPQNMTWQQNTLSVLSPKTVPMKQMGAPSKPNKLFRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYKLRGDSARLNFPNLRHLGSCVEGEFEEFKPLHSSVDAKLQAICEGMADMQKQGKSERPNRSSARSKSGSKAAQPQTVTLLDEQPVAGEADLKGAENSDNKVETSLSPVMTESGESGGSSPLLDLTFDDASEPQWESMADIFNLQKYPSEIDWASL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0376 360 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
Lele01g0376 360 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Lele01g0376 360 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Lele01g0376 360 MobiDBLite consensus disorder prediction 254 330 - -
Lele01g0376 360 CDD AP2 159 219 IPR001471 GO:0003700|GO:0006355
Lele01g0376 360 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Lele01g0376 360 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Lele01g0376 360 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Lele01g0376 360 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 360 - -
Lele01g0376 360 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700|GO:0006355
Lele01g0376 360 MobiDBLite consensus disorder prediction 303 324 - -
Lele01g0376 360 MobiDBLite consensus disorder prediction 269 285 - -
Lele01g0376 360 FunFam Ethylene-responsive transcription factor 2 159 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0376 Lele-ChrLele01 2193214 2194296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0376 1 360 AP2-EREBP Transcription Factor Family AT1G78080 48.267 2.44e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele01g0376 AP2 9.6e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0347 26 2090172 2090805 Lele01g0376 01 2193214 2194296 CCT
Lele27g1755 27 22736017 22739754 Lele01g0376 01 2193214 2194296 CCT
Lele28g0346 28 2105859 2108724 Lele01g0376 01 2193214 2194296 CCT
Lele01g0376 01 2193214 2194296 Lele01g0376 01 2193214 2194296 ECH
Lele01g0376 01 2193214 2194296 Lele03g0383 03 2215061 2216146 hybridization
Lele01g0376 01 2193214 2194296 Lele04g0380 04 2263366 2264442 hybridization