Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0372 ATGGCTGCTAAAGTCTGTCACCAGGCTATTGGTACTCTTCAGTCAGAGTCGCTTCATAAAAATTCTAAAAATCACCAAAATCTTCAGAAGAACTCAATAAGATTGATAGCAAAGGATTTTAGCAGCTGCAACAGCTTGTCAAGGAGAGCTGATCAGAGGAATTGTTGCATAATCCGATCCTCAGCTTCTCAAACATCGGTGGTTGATCCAGTGTTATCCCCTTCAAGAAGCAGCACAAGTGACAGTTCCAAGAAATCAAATGAAGCAGCTTTGATCCTTATTCGACATGGTGAATCATTATGGAATGAAAAGAATTTATTCACAGGCTGCGTAGATGTCCCACTAAGTAAGAAGGGCATAGATGAGGCGATTGAAGCTGGCAAAAGGATCAGTAGCATTCCTGTTGATGTCATATTTACATCTGCTCTGATTCGTGCACAAATGACAGCAATGCTTGCCATGACCCAGCACCGTCGAAGAAAGGTGCCTATCATCATACACAATGAGAGTGAACAAGCAAGAGCATGGAGCCAAGTATTTAGCGAAGATACAAAAAAGCAATCCATTCCAGTCATAGCAGCTTGGCAACTAAATGAAAGAATGTATGGAGAGCTACAGGGTCTTAACAAGCAGGAAACAGCTGACAGATATGGGAAAGAACAAGTCCATGAATGGCGCCGAAGCTATGATACACCTCCTCCAAGTGGTGAGAGTTTGGAAATGTGTGCTGAAAGGGCAGTTGCTTATTTCAGAGAGCAGATTGAGCCCCAGCTTTCATCTGGAAAAAATGTTATGATTGCTGCTCATGGGAATTCATTGAGATCCATTATCATGTATCTTGACAAACTAACTTCCCAAGAGGTCATTAGCTTGGAATTATCCACTGGAATTCCCATGCTTTATATTTTCAAAGAAGGAAGATTCATTAGGAGGGGGAGTCCCATAGGACCAACTGAAGCTGGAGTTTATGCCTATACTAGGCGTTTGGCTCATTACAGACAAAAATTGGATGAAATGTACTAG 1023 0.4184 MAAKVCHQAIGTLQSESLHKNSKNHQNLQKNSIRLIAKDFSSCNSLSRRADQRNCCIIRSSASQTSVVDPVLSPSRSSTSDSSKKSNEAALILIRHGESLWNEKNLFTGCVDVPLSKKGIDEAIEAGKRISSIPVDVIFTSALIRAQMTAMLAMTQHRRRKVPIIIHNESEQARAWSQVFSEDTKKQSIPVIAAWQLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDTPPPSGESLEMCAERAVAYFREQIEPQLSSGKNVMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGRFIRRGSPIGPTEAGVYAYTRRLAHYRQKLDEMY 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0372 340 PANTHER PHOSPHOGLYCERATE MUTASE 79 328 IPR005952 GO:0004619|GO:0006096|GO:0016868
Lele01g0372 340 SMART PGAM_5 90 276 IPR013078 -
Lele01g0372 340 Hamap 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 88 315 IPR005952 GO:0004619|GO:0006096|GO:0016868
Lele01g0372 340 Pfam Histidine phosphatase superfamily (branch 1) 186 294 IPR013078 -
Lele01g0372 340 Pfam Histidine phosphatase superfamily (branch 1) 91 167 IPR013078 -
Lele01g0372 340 SUPERFAMILY Phosphoglycerate mutase-like 91 307 IPR029033 -
Lele01g0372 340 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 93 102 IPR001345 GO:0003824
Lele01g0372 340 CDD HP_PGM_like 91 310 IPR013078 -
Lele01g0372 340 Gene3D - 80 313 IPR029033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0372 Lele-ChrLele01 2161731 2164339 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0340 26 2031169 2032701 Lele01g0372 01 2161731 2164339 CCT
Lele27g1760 27 22768952 22771602 Lele01g0372 01 2161731 2164339 CCT
Lele01g0372 01 2161731 2164339 Lele01g0372 01 2161731 2164339 ECH
Lele01g0372 01 2161731 2164339 Lele03g0378 03 2181580 2184913 hybridization
Lele01g0372 01 2161731 2164339 Lele04g0375 04 2219180 2222284 hybridization