LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele01g0366	ATGGGGGATCCAGCTGATGAAACCCATAAAACAAAAGAGAAGGATGCTAGAAGCGTGTCATCTTCACAGGTTCAGGCACCACAACTTCACAAAGTAGGAATTCCTCCGCGACAGAAACTGTTCAAGGAATTCCAATCCCTTGTCAAAGAAACATTCTTTGCTGATGATCCTCTACGCTCTTTCAAAGACCAGACTAAATTCCGGAAATTCATCCTCGGCATTGAGGCGGTATTCCCCATTCTTAACTGGGGCAGAAATTACAATGCTGTCAAATTCAGAGGAGATCTCATAGCTGGTCTAACTATTGCAAGTCTCTGCATTCCTCAGGATATTGGGTACGCAAAGCTTGCAAATTTGGCTCCAGAGTACGGGCTGTATTCCAGCTTTGTCCCTCCACTGATTTATGCTATCATGGGTAGTTCTCGTGATATCGCCATAGGACCTGTGGCAGTGGTTTCGCTCTTGCTAGGAACCTTACTTGAGAATGAGATTGATCCTATTGAACATCCATCTGAATATCGAAGGCTTGCTTTCACAGCTACTTTTTTTGCTGGCATTACTCAAGCAACTCTTGGGGTCTTCAGGTTAGGTTTTTTGATTGACTTCCTCTCCCATGCTGCTATTGTCGGTTTTATGGCTGGAGCTGCTATCACCATTGCCCTTCAACAGCTTAAAGGTTTCCTTGGCATTAAGAAGTTCACAAAGAAAACTGATGTTGTGTCTGTGTTGCATTCAGTATTCTCAACAGCCCATCATGGTTGGAACTGGCAGACTATAGTTCTAGGAGCAAGCTTTTTGGTTTTTCTGCTGACTGCAAGATATATCGGCAAGAAGAACAAGAAATTCTTCTGGGTGCCAGCCATAGCCCCGCTGATATCTGTTGTTCTCTCCACTTTAATTGTGTTCGTAACCCGTGCAGACAAGGAGGGTGTTGGAATTGTAAAACACATAAAGAAGGGGATCAATCCTTCATCTGTTAAAGAGATATATTTTAGTGGGGATTTCCTTGGGAAAGGTTTCAAGATTGGCATTATGGCTGGAATGATAGCATTGACAGAAGCCACAGCAATAGGAAGAACATTTGCTTCTATGAAGGATTATCATTTGGATGGAAATAAGGAAATGACAGCATTAGGAGCAATGAATATTGTTGGTTCAATGACTTCCTGCTATGTAGCAACAGGTTCTTTTTCTCGGTCAGCAGTGAATTACATGGCTGGCTGCCAAACTGCAGTCTCAAATATTATTATGTCCATTGTTGTGTTCTTAACCCTTCAATTCATTACACCTCTCTTCAAGTATACCCCAAATGCCATTCTTTCTTCCATCATCATATCTGCTGTAATTGGCCTCGTGGACTATCAGGCAGCAATCTTAATTTGGAAGATTGATAAGTTTGATTTTATTGCTTGCATGGGAGCCTTCTTTGGGGTTGTTTTTGTCTCAGTTGAGATAGGACTTTTAATTGCTGTCACTATATCCTTTGCTAAAATCCTATTACAAGTTACCAGACCGAGAACAGCTATTCTGGGGAAGATTCCTGGGACTACTGTCTATAGAAATACCCAACAATACCCGGAGGCCACAAAGGTTCCTGGTGTGCTGGTTGTAAGAATTGATTCTGCCATATACTTTTCCAACTCCAACTATGTTAAAGAAAGGATATTGAGATGGCTGATGGATGAGGAAGAAAGAGTGAAAAGAGACTACCAAACACAAATCAAATTTTTTATAGTTGAAATGTCGCCGGTTACTGACATTGATACCAGTGGCATTCATGCCTTTGAAGAGTTACACAGAAGTCTTCAAAAGAGAGATGTTCAGCTTGTTCTAGCAAACCCCGGCTCAGTAGTGATAAACAAGCTTCACACATCCAATTTTGCAAATCTGATCGGCGAGGACAAGATCTACCTCACAGTTGCAGATGCTGTTGCATACTGTTCTTCAAAACTAGCACAAGAGCCTTGA	1968	0.4182	MGDPADETHKTKEKDARSVSSSQVQAPQLHKVGIPPRQKLFKEFQSLVKETFFADDPLRSFKDQTKFRKFILGIEAVFPILNWGRNYNAVKFRGDLIAGLTIASLCIPQDIGYAKLANLAPEYGLYSSFVPPLIYAIMGSSRDIAIGPVAVVSLLLGTLLENEIDPIEHPSEYRRLAFTATFFAGITQATLGVFRLGFLIDFLSHAAIVGFMAGAAITIALQQLKGFLGIKKFTKKTDVVSVLHSVFSTAHHGWNWQTIVLGASFLVFLLTARYIGKKNKKFFWVPAIAPLISVVLSTLIVFVTRADKEGVGIVKHIKKGINPSSVKEIYFSGDFLGKGFKIGIMAGMIALTEATAIGRTFASMKDYHLDGNKEMTALGAMNIVGSMTSCYVATGSFSRSAVNYMAGCQTAVSNIIMSIVVFLTLQFITPLFKYTPNAILSSIIISAVIGLVDYQAAILIWKIDKFDFIACMGAFFGVVFVSVEIGLLIAVTISFAKILLQVTRPRTAILGKIPGTTVYRNTQQYPEATKVPGVLVVRIDSAIYFSNSNYVKERILRWLMDEEERVKRDYQTQIKFFIVEMSPVTDIDTSGIHAFEELHRSLQKRDVQLVLANPGSVVINKLHTSNFANLIGEDKIYLTVADAVAYCSSKLAQEP	655

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele01g0366	655	MobiDBLite	consensus disorder prediction	1	17	-	-
	Lele01g0366	655	SUPERFAMILY	SpoIIaa-like	526	648	IPR036513	-
	Lele01g0366	655	TIGRFAM	sulP: sulfate permease	79	643	IPR001902	GO:0016020\|GO:0055085
	Lele01g0366	655	CDD	STAS_SulP_like_sulfate_transporter	525	640	-	-
	Lele01g0366	655	Pfam	Sulfate permease family	92	472	IPR011547	GO:0016020
	Lele01g0366	655	ProSitePatterns	SLC26A transporters signature.	121	142	IPR018045	GO:0008271\|GO:0008272
	Lele01g0366	655	ProSiteProfiles	STAS domain profile.	524	647	IPR002645	-
	Lele01g0366	655	Pfam	STAS domain	525	643	IPR002645	-
	Lele01g0366	655	FunFam	Sulfate transporter 31	504	650	-	-
	Lele01g0366	655	PANTHER	SULFATE TRANSPORTER	38	648	IPR001902	GO:0016020\|GO:0055085

Showing 1 to 10 of 12 entries

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele01g0366	Lele-ChrLele01	2118531	2121885	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele01g0366	20	654	Inorganic Solute Cotransporters	AT1G22150	75.591	0.0	979

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele26g0331	26	1988675	1991670	Lele01g0366	01	2118531	2121885	CCT
	Lele27g1767	27	22810456	22813456	Lele01g0366	01	2118531	2121885	CCT
	Lele28g0333	28	2011177	2014160	Lele01g0366	01	2118531	2121885	CCT
	Lele01g0366	01	2118531	2121885	Lele01g0366	01	2118531	2121885	ECH
	Lele01g0366	01	2118531	2121885	Lele03g0371	03	2129294	2132641	hybridization
	Lele01g0366	01	2118531	2121885	Lele04g0367	04	2173145	2176492	hybridization

Showing 1 to 6 of 6 entries