Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0356 ATGAGCAGCCTGAAAACGCTGAGTAGACCGCAACCACTGTTCTCCTTCATTAGTTGCAGACAACTATTTCGAGCCAGGGCTTCATTTCGAAGCGCTAATTGCAAGCCTCGTTCACCATCGCCGTCAATATATTCTACATGGTTGGATCCTCCGGGTTCGAGCAGAATTGAGTTTGGGTTTCGCGGCAGCCAGAGGAGGACCGTGGTCAAGGCATCGAATTGGACTGAGCAAAGATCCCCATATGAAACTCTTGAATTAGGAAGAGACGCTGATGAGGAACAGATAAAGAATGCTTATAGACGTTTGGCCAAATTTTATCACCCAGATGTCTATGATGGCAGAGGAACCCTTGAGGAAGGTGAAACAGCAGAAGCAAGGTTCATAAAGATTCAAGCTGCTTATGAATTACTCATAGATGATGAGAGGAGGAGGCAGTATGATATGGACAACCGAGTAAACCCAATGAAGGCATCTGAGGCATGGATGGAGTGGCTTATGAAAAAGCGAAAGGCTTTTTATCAGCGAGGTGATATGGCTATTGCCGCTTGGGCAGAGCGGCAACAGCGTGAGTTAAATATCCGTGCACGGACTCTATCTCGTTCAAAGATAGATCCAGAAGAAGAAAGGAAAATCCTGGCAAGAGAAAAGAAAGCTTTTGCTGAAAATTTCAACAATACCCTTAAGAGGCATACACTTGTATTGAAGAAAAGAGATATAATGCGGAAAAAGGCTGAGGAAGAAAGAAAGAAGACTATCGCTCAGCTGTTGGCTGCAGAGGGTCTTGAGCTTGATTCAGATAGTGACGAGGCACTGTAG 816 0.451 MSSLKTLSRPQPLFSFISCRQLFRARASFRSANCKPRSPSPSIYSTWLDPPGSSRIEFGFRGSQRRTVVKASNWTEQRSPYETLELGRDADEEQIKNAYRRLAKFYHPDVYDGRGTLEEGETAEARFIKIQAAYELLIDDERRRQYDMDNRVNPMKASEAWMEWLMKKRKAFYQRGDMAIAAWAERQQRELNIRARTLSRSKIDPEEERKILAREKKAFAENFNNTLKRHTLVLKKRDIMRKKAEEERKKTIAQLLAAEGLELDSDSDEAL 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0356 271 SMART dnaj_3 78 142 IPR001623 -
Lele01g0356 271 Pfam DnaJ domain 80 147 IPR001623 -
Lele01g0356 271 ProSiteProfiles dnaJ domain profile. 79 150 IPR001623 -
Lele01g0356 271 Coils Coil 241 261 - -
Lele01g0356 271 CDD DnaJ 80 139 IPR001623 -
Lele01g0356 271 PRINTS DnaJ domain signature 122 142 IPR001623 -
Lele01g0356 271 PRINTS DnaJ domain signature 99 114 IPR001623 -
Lele01g0356 271 PRINTS DnaJ domain signature 81 99 IPR001623 -
Lele01g0356 271 ProSitePatterns Nt-dnaJ domain signature. 127 146 IPR018253 -
Lele01g0356 271 Gene3D DnaJ domain 66 176 IPR036869 -
Lele01g0356 271 PANTHER CO-CHAPERONE PROTEIN DJLA 59 265 - -
Lele01g0356 271 FunFam Chaperone protein dnaJ 65 170 - -
Lele01g0356 271 SUPERFAMILY Chaperone J-domain 73 148 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0356 Lele-ChrLele01 2069407 2071425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0356 71 147 C2H2 Transcription Factor Family AT1G74250 37.662 1.80e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0356 01 2069407 2071425 Lele01g0356 01 2069407 2071425 ECH
Lele01g0356 01 2069407 2071425 Lele03g0362 03 2084288 2086302 hybridization
Lele01g0356 01 2069407 2071425 Lele04g0358 04 2118651 2120747 hybridization