Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0338 ATGACCAAACCCAGAACCCAAAGCAAAGACTCCAAACATGTCAACCGAAACCAGAATCAGAAAACAGAGAAACAAGCCTCTTGGGCAGCGATAAGAGGCATATTGCCCTATAGAACTGTCCAAATTCAGCAGCCGCCGCAGCCGGAAGTGGAACAACCGAAGCAGAAACAAGAGCTAAGGATGCTACAAGAAGAAGAAGCGGCAGCCCCAGAAGAAAGCAGAAAGAAGTGCAAGAAAATGAGATGTTCTGCTTCACTATGTAACAACACCAAGATCGTGGCAAGGCCTGAAACAGTGACTCCTGACATCAACAAGGTCAAAAGGGCGTCTAAGCTGGGTGCATGTAACACGGCCAACAATGATTCTTCTCATTCTAAAAGATCCTTGAAAGCTCCTCTGCATGAACTGAATGGTGTGGTTGCGTCTGCTTCTTCTTCTAACTCTCTGTCTGTATCTTCAAACTCTTCTGTGAGTGGGTCTTTTCGGGGAATGCCGTTCAGGAGGTTCTCTGGTTGTTATGAGTGTCGAATGGTGGTTGACCCTCTTCTTCCTTTCAGCAGAGACCCGTCTCTCAGGAGTAGCATTTACCCTTGCCCTCACTGTGGTGAGATCTTCATGAAACCTGAAAATCTAGAGATTCATCAGGCTGTTAAACATGCTGTATCTGAACTGGGTCCAGAAGATACGAGCAAGAACATAGTGGAAATTATATTCCACTCAAGCTGGCTAAAGAAACAATCTCCAGTCTGCAAAATAGACCGCATCCTTAAAGTCCACAACACTCAGAGGACAATTACCAAATTCGAAGAGTACAGAGAATCCATCAAAACCAAAGCCATGAAGCTTCCAAAGAAGCACCCTCGTTGTATAGCAGATGGGAACGAGCTACTGAGGTTCCATTGCACGACCTGTTTGTGCTCACTGGGCCTAAAAGGCTCCACTAACCTCTGTAACTCAATACCACAGTGCAGCGTGTGTGGCATAATCAAGAATGGCTTCAAGGTGGTCGCCGGCGGTGGAAAAGGGGTATTGACGACGGCGACAAGTGGGAAAGCACACGACAAAGCCGAGGTTTCAGGCGACGAGAATAATAAGAAGAGAGCAATGCTGGTATGCAGGGTGATAGCAGGGAGGGTGAAGAAGAATATTGAAGGAGGAGGAATAATGAGTACGGAAGAGTATGATTCTTTTGCCGGAGAAGTTGGGTCTTATTCCAATTTGGAAGAGTTGTATGTGACCAATCCTAGAGCTATTTTGCCCTGCTTCGTTGTTTTTCACTCTGGTTTTTGA 1290 0.4612 MTKPRTQSKDSKHVNRNQNQKTEKQASWAAIRGILPYRTVQIQQPPQPEVEQPKQKQELRMLQEEEAAAPEESRKKCKKMRCSASLCNNTKIVARPETVTPDINKVKRASKLGACNTANNDSSHSKRSLKAPLHELNGVVASASSSNSLSVSSNSSVSGSFRGMPFRRFSGCYECRMVVDPLLPFSRDPSLRSSIYPCPHCGEIFMKPENLEIHQAVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRILKVHNTQRTITKFEEYRESIKTKAMKLPKKHPRCIADGNELLRFHCTTCLCSLGLKGSTNLCNSIPQCSVCGIIKNGFKVVAGGGKGVLTTATSGKAHDKAEVSGDENNKKRAMLVCRVIAGRVKKNIEGGGIMSTEEYDSFAGEVGSYSNLEELYVTNPRAILPCFVVFHSGF 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0338 429 FunFam C2H2-like zinc finger protein 220 427 - -
Lele01g0338 429 MobiDBLite consensus disorder prediction 1 19 - -
Lele01g0338 429 SUPERFAMILY ADP-ribosylation 221 427 - -
Lele01g0338 429 SMART c2h2final6 196 219 IPR013087 -
Lele01g0338 429 MobiDBLite consensus disorder prediction 1 27 - -
Lele01g0338 429 MobiDBLite consensus disorder prediction 39 58 - -
Lele01g0338 429 ProSitePatterns Zinc finger C2H2 type domain signature. 198 219 IPR013087 -
Lele01g0338 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 224 IPR013087 -
Lele01g0338 429 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 79 424 - -
Lele01g0338 429 Gene3D - 220 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0338 Lele-ChrLele01 1950169 1951576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0338 161 426 C2H2 Transcription Factor Family AT1G75710 53.425 2.56e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele01g0338 None None None