Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0323 ATGGTCAAGAGAGGGGACAAGATCCACACTGAAACATCATCAAAGGCAATGCAATCTCAATCTTCGTCGTCAACATCATCAGATGGGAAAAAGAAGTATAAGGGAGTGAGAATGAGAAGCTGGGGCTCATGGGTTTCAGAGATTAGAGCACCAAACCAGAAAACAAGAATATGGTTGGGATCTTATTCAACCCCAGAAGCTGCAGCTCGAGCCTACGATGCTGCACTTTTATGCCTGAAGGGTTCTTCAGCTAATCTCAACTTCCCTTCAAGTTCTTCACACTATGTTCCTCAAGATACAGACATGTCTCCTAAATCAATCCAAAGAGTTGCTGCAGCGGCTGCTAATAGCTTTACAGACAATGCCACAAGCCCAGCTTCAGCTTCTGCCTCTGCATCAACCTCATCGTCCCCACTCGTCTCGTCCCCTTCATCAATGTCGTCAGATCAAATCGATGATGATGTTTCATTAATCTCGTCATTTGGGGGCTACAGTACTAGTTGTGATCAGAGTAATGAACCAGTCTCTTTGATGGAGGACTCTTATTGGTATAGCTTTGATGATTTACAATCGCCAAAGTATGTAAATCAAATGCTCGGTGGTAATTTGTTTGATATTGATCCAAACCAGCTGCTGGAGGACGATTTTCGCGAAGAAAGTGATATTCGTTTGTGGAGCTTCTGCTGA 687 0.4381 MVKRGDKIHTETSSKAMQSQSSSSTSSDGKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANLNFPSSSSHYVPQDTDMSPKSIQRVAAAAANSFTDNATSPASASASASTSSSPLVSSPSSMSSDQIDDDVSLISSFGGYSTSCDQSNEPVSLMEDSYWYSFDDLQSPKYVNQMLGGNLFDIDPNQLLEDDFREESDIRLWSFC 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0323 228 FunFam ethylene-responsive transcription factor ERF014-like 31 91 - -
Lele01g0323 228 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Lele01g0323 228 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Lele01g0323 228 Pfam AP2 domain 32 81 IPR001471 GO:0003700|GO:0006355
Lele01g0323 228 MobiDBLite consensus disorder prediction 123 150 - -
Lele01g0323 228 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Lele01g0323 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 165 - -
Lele01g0323 228 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Lele01g0323 228 MobiDBLite consensus disorder prediction 1 36 - -
Lele01g0323 228 SUPERFAMILY DNA-binding domain 32 90 IPR016177 GO:0003677
Lele01g0323 228 MobiDBLite consensus disorder prediction 12 29 - -
Lele01g0323 228 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Lele01g0323 228 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0323 Lele-ChrLele01 1856669 1857355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0323 1 227 AP2-EREBP Transcription Factor Family AT1G21910 45.977 1.20e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele01g0323 AP2 3e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0323 01 1856669 1857355 Lele01g0323 01 1856669 1857355 ECH
Lele01g0323 01 1856669 1857355 Lele03g0331 03 1853155 1858339 hybridization
Lele01g0323 01 1856669 1857355 Lele04g0328 04 1909013 1909669 hybridization