Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0295 ATGCCAGTTTGTCCGACGATAGCCAAGTTTCAGAAGCACAACCAGTGTACAAAGAAGCCAGAAGCTGACCTGGGATTTGCTGTGTCGAGTACCCATTATGTTGGATTTAGGCAGCTTTTAGCTGTTGGAGTCTATATGATTATATCTTTATCAGCGAAGGAGGAGGAAAGAAAAAAGAAAGAAAAGGCTGTATATAACAAAAATTGGTCACAAGACTTGAAGAAATTTAAGGTCAAAGAGAAGCAGAGATCAATGGGAAGCCTACAACAGCAGCAACAACAGCTTGGAGGTAGCAGACGCATAGCAGCGGTGGACGCTTCTCCTCCTGCGCCAGTCCAAAATACCGACTCAAAACAGGAACAACCCGGTTGGAGGAAGCTTTTGGCCTTTATAGGTCCTGGTTTCCTGGTTTCCTTAGCTTACCTTGATCCTGGAAACTTGGAAACTGATCTTCAAGCTGGAGCTAACCACGGATATGAGCTGCTGTGGGTGATTCTCGTTGGGCTCATCTTCGCCCTCATCATTCAGTCCTTGGCTGCAAATCTTGGCGTAAGCACTGGCAAACACCTTTCGGAATTGTGCAAAGCGGAGTATCCATGGTTTGTCAAGTATTGCTTATGGCTATTAGCCGAGCTTGCTGTTATAGCCGCAGACATCCCTGAAGTGATTGGCACCGCCTTTGCTCTCAACATACTCTTCAAAATCCCCGTATGGGGTGGAGTTCTGGTGACTGGCTTGAGCACTCTCTTGCTTCTGGGTCTCCAAAGATTCGGGATAAGGAAGCTGGAATTGCTGATATCAACGCTGGTGCTTATAATGGCGGGATGTTTCTTCGGAGAAATGAGCTACGTAAAGCCACCAGCCTCTGGGGTACTCAAAGGCATGTTCGTCCCAAAACTCAGTGGTCAAGGAGCCACCGGCGATGCCGTTGCCCTCTTCGGTGCTCTTGTCATGCCGCACAACCTTTTTCTCCACTCTGCTCTTGTGCTCTCCAGAAAAGTTCCCAATACAGTGCGTGGCATCAATGACGCGTGCAGATTTTTCCTAATGGAAAGTGGAATTGCGCTCTTTATAGCGTTTTTAATCAATGTGGCAGTAGTCTCTGTATCTGGCACCGTTTGTGCTTCCTCCAACCTTTCTGACGAAAATGCAGATCATTGCAGCGATCTCACTCTTAACTCTGCTTCTTTCCTTCTCAAGAATGTTCTGGGCCGGTCGAGCTCAACCATTTATGCCATCGCACTGCTTGCCTCAGGCCAAAGCTCTGCCATCACTGGCACATATGCAGGCCAATTCATTATGCAGGGTTTCTTGGACATGAAGATGAAAAAATGGATCCGGAACTTGGTGACTCGGGCTGTTGCCATAACTCCTAGTCTTATTGTCTCCCTTATTGGTGGATCATCTGGCGCAGGACGGCTCATCGTCATCGCCTCGATGATACTTTCATTTGAACTTCCATTCGCTCTGATCCCACTGCTCAAGTTTAGCAGCAGCAGCACCAAGATGGGTCCTCACAAGAATTCCATGATCATCATAGTCATATCCTGGATTCTGGGGGCAGGGATCATCGGAATCAACGTGTATTACCTAAGTACAGGGTTCGTGGGTTGGCTGATTCATAGCAATCTACCAAAGGTGGCGAATGTGTTCATCGGGATCATAGTGTTCCCATTGATGGCGATTTACATTGTAGCAGTGATATACCTGACCCTAAGAAAAGACACAGTGAAGACATATATAGAGACGAAGGACGACCCCACAGTTCAGACCCACATGGAGAAGGGCTTCATGAACCCTAATAATGGCCTATTGGAGTTGGGTCATGCTCCCTACAGAGAGGATTTAGCCGACGTTCCATTCCCCGAATAG 1872 0.4749 MPVCPTIAKFQKHNQCTKKPEADLGFAVSSTHYVGFRQLLAVGVYMIISLSAKEEERKKKEKAVYNKNWSQDLKKFKVKEKQRSMGSLQQQQQQLGGSRRIAAVDASPPAPVQNTDSKQEQPGWRKLLAFIGPGFLVSLAYLDPGNLETDLQAGANHGYELLWVILVGLIFALIIQSLAANLGVSTGKHLSELCKAEYPWFVKYCLWLLAELAVIAADIPEVIGTAFALNILFKIPVWGGVLVTGLSTLLLLGLQRFGIRKLELLISTLVLIMAGCFFGEMSYVKPPASGVLKGMFVPKLSGQGATGDAVALFGALVMPHNLFLHSALVLSRKVPNTVRGINDACRFFLMESGIALFIAFLINVAVVSVSGTVCASSNLSDENADHCSDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSAITGTYAGQFIMQGFLDMKMKKWIRNLVTRAVAITPSLIVSLIGGSSGAGRLIVIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIIVISWILGAGIIGINVYYLSTGFVGWLIHSNLPKVANVFIGIIVFPLMAIYIVAVIYLTLRKDTVKTYIETKDDPTVQTHMEKGFMNPNNGLLELGHAPYREDLADVPFPE 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0295 623 Pfam Natural resistance-associated macrophage protein 148 509 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele01g0295 623 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 125 501 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele01g0295 623 Hamap Divalent metal cation transporter MntH [mntH]. 114 535 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele01g0295 623 PRINTS Natural resistance-associated macrophage protein signature 234 253 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele01g0295 623 PRINTS Natural resistance-associated macrophage protein signature 206 232 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele01g0295 623 PRINTS Natural resistance-associated macrophage protein signature 447 464 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele01g0295 623 PRINTS Natural resistance-associated macrophage protein signature 259 280 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele01g0295 623 PRINTS Natural resistance-associated macrophage protein signature 419 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele01g0295 623 PRINTS Natural resistance-associated macrophage protein signature 479 498 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele01g0295 623 PRINTS Natural resistance-associated macrophage protein signature 309 332 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lele01g0295 623 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 95 577 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0295 Lele-ChrLele01 1687024 1691792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0295 112 599 Inorganic Solute Cotransporters AT1G80830 60.852 0.0 618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0295 01 1687024 1691792 Lele01g0295 01 1687024 1691792 ECH
Lele01g0295 01 1687024 1691792 Lele03g0300 03 1678211 1681240 hybridization
Lele01g0295 01 1687024 1691792 Lele04g0291 04 1720348 1723120 hybridization