Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0293 ATGGCGCCAATCGTTCAGAGCTCCCAGCCATGGGTGGAGAAATATCGGCCAAAGCAAGTTAAAGATGTAGCCCACCAGGATGAAGTGGTTCGAGTACTCACAAACACCCTCGAAACCGGAAGTTGCCCGCACATGCTCTTCTACGGTCCACCCGGCACTGGAAAGACCACAACTGCACTTGCAATCGCCCGTCAGCTCTTCGGACCTGAGCTTTACAAGTCTAGGGTGCTGGAACTGAATGCGAGTGATGACCGTGGGATTAATGTTGTGCGGACAAAGATTAAGGATTTTGCTGGTGTGTCTGTTAGTACCAATCCGCGTAAGAGTGGTTATCCATGCCCGCCATATAAGATTATTGTTCTAGACGAGGCAGATTCAATGACCGAAGATGCTCAGAATGCTCTGCGTCGTACAATGGAAACTTACTCTAAGCTTACACGGTTCTTTTTCATATGCAATTACATTAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTTAAGCCCCTGCCAGAAGAAATCATGAGCAGTCGGATACTGTACATTTGCAACCAAGAAGGGCTTAACCTTGATTCTGAGGCTCTTTCAACCCTTAGTTCCATTTCTCAAGGAGATCTCCGTAGGGCTATTACATACTTACAGTCAGCTGCCCGCTTATTTGGATCTTCAATTTCTTCAAAGGAGCTGATTTCTGTCTCTGGGGTCATCCCAACAGAGGTTGTGCAAACATTTGTTGCAACATGTAAAAGTGGTAATTTTGATTTAGCAAACAAGGAAGTCAATAATTTTATCGCAGAAGGATATCCAGTCTCTCAGTTACTCACTCAGGTATTTGAGGCCATGGTTGAAGCAGATGATATATCAGATGAACAGAAGGCAAGAATATCCAAGAAATTGGGTGAGGCAGATAAGTGCCTTGTCGATGGTGCTGATGAATATTTGCAGCTTCTTGATGTGGCCAGCAATACAATTCGAACTTGTTGTAACATGCCAGAGGGATTTTCTTACGAGGGATAG 1029 0.447 MAPIVQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIARQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAGVSVSTNPRKSGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKLTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMSSRILYICNQEGLNLDSEALSTLSSISQGDLRRAITYLQSAARLFGSSISSKELISVSGVIPTEVVQTFVATCKSGNFDLANKEVNNFIAEGYPVSQLLTQVFEAMVEADDISDEQKARISKKLGEADKCLVDGADEYLQLLDVASNTIRTCCNMPEGFSYEG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0293 342 Gene3D - 240 329 - -
Lele01g0293 342 Gene3D - 2 173 IPR027417 -
Lele01g0293 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 228 IPR027417 -
Lele01g0293 342 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Lele01g0293 342 FunFam Replication factor C subunit 4 240 329 - -
Lele01g0293 342 CDD HLD_clamp_RFC 174 226 - -
Lele01g0293 342 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 321 - -
Lele01g0293 342 SMART AAA_5 41 174 IPR003593 -
Lele01g0293 342 Pfam Replication factor C C-terminal domain 241 324 IPR013748 -
Lele01g0293 342 FunFam Replication factor C subunit 4 176 239 - -
Lele01g0293 342 FunFam Replication factor C subunit 5 3 174 - -
Lele01g0293 342 Gene3D - 176 239 - -
Lele01g0293 342 CDD AAA 26 166 - -
Lele01g0293 342 SUPERFAMILY post-AAA+ oligomerization domain-like 241 325 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0293 Lele-ChrLele01 1679338 1683161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0293 1 338 Core DNA Replication Machinery Family AT1G21690 76.991 0.0 545
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0293 01 1679338 1683161 Lele01g0293 01 1679338 1683161 ECH
Lele01g0293 01 1679338 1683161 Lele03g0297 03 1668048 1671960 hybridization
Lele01g0293 01 1679338 1683161 Lele04g0288 04 1707804 1711583 hybridization