Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0292 ATGTTAGCCCAGAATCGGCGTCCATCCTTTTTCTCATCGACGACGTCGTCTTTAGCAAAGCGTCATGCATCCTCGTCGGAGAATGTGGAGAAGGCTATGGCAGCCCCTTCTCACTTGGCCAAGAAGCGAGCGCCTCTCAGTAACCTGACCAATCAACAGAATGCGTCCCACAGTGCTTTGCGAAAGTCACTGCCATCATCTACTTTGGTACCCTGCGCAACTAAAACTACTCGGACAAAGAAGAAATTCCCTGCTTGCACAACAAGCTCAGCCATTTCCGGGAATAAAATGCCTACTTCGTCAAATGCTAAATCGGCTGCAGTTGTTTTCCCCAAGGCCACTTCTTTACCACAAAGGGATGAAAGTGCTTCTGCTACTGTTGCTCTTCATTGCAGCATGGATACTTCTCCTATCAAATTGGATAGGATGTCAGTTTCTTTGGACGAGACGATGTCCACCTGTGACTCTTTCAAGAGTCACGAAATTGAATATATTGACAACAGCGATGCTTCAGCTCTTGATTCTATTGACAGAAAGACATTCAGCAATCTGAACATCTCAGATAATACGGAGGCACCAGTTAATGCTTGTACTAGAGGCATACTTCTTGACTTGGAAAGAGATGGCAAATTTGTCAATATCGATGACAACTACTTGGATCCCCAGCTTTGTGCACCCTATGCGTGTGATATCTACAAGCATTTGCGTGCATCTGAGGCAAAGAAAAGGCCTTCCACAGATTTCATGGAGAGAATTCAGAAGGACATAAATTCCCACATGCGTGCTATATTAGTTGACTGGCTCGTGGAGGTGGCTGAAGAGTATAGGCTTGTGCCTGATACATTGTATTTGACAGTCAACTACTTAGATCGGTATCTTTCAGGGAATGAGATGAGTAGACAAAAGTTACAATTACTTGGTGTTGCCTGCATGATGATTGCCGCTAAATATGAGGAGATTTGCGCGCCTCAGGTGGAAGAATATTGTTATATAACTGATAACACATACTTCAAAGAAGAGGTTTTGCAAATGGAATCTGCTGTCTTAAATTATCTAAAGTTTGAAATGGCAGGTCCGACAATAAAATGTTTCTTGAGACGATTTGTTCGTGCAGCTCAAGTAGTCAGCGAGGTGGCATCATTACAATTAGAGTGCTTGACCAGCTATATTGCTGAATTGTCTTTACTGGAGTATACAATGCTCTGTTATGCCCCATCACTTATAGCTGCTTCTGCAATCTTCCTGGCGAAACTCATCCTTTTCCCTTCAAAAAAACCATGGAATTCCACATTGCAGCATTACACACTCTACAAGGCTTCTGATTTGCGTAACTGTGTGAAGGATCTCCATCGTCTATGTTATAACAGCCATGGTTCTAGCTTACCTGCAATCCGGGAGAAATACAGTCAACACAAGTACAAATATGTGGCAAAGAAGTCCTGGGGCCTCTCTCATGTTTACCTGATGAGTTTCCTGAGGCCCTCAGCATTGTACGCCTTTCTTATTTCATGTCCTTCCTTCAGATGGATGCCTTGTCAGAGTTGGGGCTTTCTCCGATGGCCCGGTTTTGACGGCTTCTTGAGACTTGTGGTGATGTTCCTTCTCTGGTCTATGTTTTTGGAGCTTCGCTTCATACCTTCATCTTCTATGCACCCCACTCTTACAGTTGGTGATCGAATTATTGTCGAGAAGGCTTCGTATTACATCAGGAGCCCTACCGTACAGGATATTGTATTATTCCGAGATCCAACACAGCTATCTGAAGACAAAGCAGCAGATATATTTATCAAGAGAGTTGTTGCAAAAGCAGGAGATTTTGTTCAGGTTCGTCGTGGGTCTCTCTACATCAATGGTGTTGCTCAGAAGGAAGATTATGTAGCAGCACAGCCAACATACACAACGAACTTAACTTATGTACCAAACGGTCATGTTTATGTGTTAGGTGACAATCGAAACAACAGCTATGATTCCCATGTTTGGGGACCATTGCCTGTCAAAAACATAGTGGGGAGACATGTCATGTGTTGTCACAGACCCACAAACACCTGA 2049 0.4368 MLAQNRRPSFFSSTTSSLAKRHASSSENVEKAMAAPSHLAKKRAPLSNLTNQQNASHSALRKSLPSSTLVPCATKTTRTKKKFPACTTSSAISGNKMPTSSNAKSAAVVFPKATSLPQRDESASATVALHCSMDTSPIKLDRMSVSLDETMSTCDSFKSHEIEYIDNSDASALDSIDRKTFSNLNISDNTEAPVNACTRGILLDLERDGKFVNIDDNYLDPQLCAPYACDIYKHLRASEAKKRPSTDFMERIQKDINSHMRAILVDWLVEVAEEYRLVPDTLYLTVNYLDRYLSGNEMSRQKLQLLGVACMMIAAKYEEICAPQVEEYCYITDNTYFKEEVLQMESAVLNYLKFEMAGPTIKCFLRRFVRAAQVVSEVASLQLECLTSYIAELSLLEYTMLCYAPSLIAASAIFLAKLILFPSKKPWNSTLQHYTLYKASDLRNCVKDLHRLCYNSHGSSLPAIREKYSQHKYKYVAKKSWGLSHVYLMSFLRPSALYAFLISCPSFRWMPCQSWGFLRWPGFDGFLRLVVMFLLWSMFLELRFIPSSSMHPTLTVGDRIIVEKASYYIRSPTVQDIVLFRDPTQLSEDKAADIFIKRVVAKAGDFVQVRRGSLYINGVAQKEDYVAAQPTYTTNLTYVPNGHVYVLGDNRNNSYDSHVWGPLPVKNIVGRHVMCCHRPTNT 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0292 682 Gene3D Umud Fragment, subunit A 547 679 - -
Lele01g0292 682 CDD CYCLIN 260 349 IPR013763 -
Lele01g0292 682 Gene3D - 230 478 - -
Lele01g0292 682 PANTHER CYCLINS 163 474 IPR039361 -
Lele01g0292 682 SMART Cyclin_C_2 359 492 IPR004367 -
Lele01g0292 682 ProSitePatterns Signal peptidases I serine active site. 547 554 IPR019756 GO:0004252|GO:0016020
Lele01g0292 682 Gene3D - 244 357 - -
Lele01g0292 682 CDD S26_SPase_I 541 671 IPR019533 GO:0004252|GO:0006465
Lele01g0292 682 Pfam Signal peptidase, peptidase S26 527 674 IPR019533 GO:0004252|GO:0006465
Lele01g0292 682 MobiDBLite consensus disorder prediction 44 66 - -
Lele01g0292 682 FunFam Cyclin A1 346 478 - -
Lele01g0292 682 Pfam Cyclin, C-terminal domain 359 478 IPR004367 -
Lele01g0292 682 ProSitePatterns Cyclins signature. 261 292 IPR006671 -
Lele01g0292 682 SUPERFAMILY LexA/Signal peptidase 538 674 IPR036286 -
Lele01g0292 682 MobiDBLite consensus disorder prediction 1 23 - -
Lele01g0292 682 CDD CYCLIN 359 450 IPR013763 -
Lele01g0292 682 Pfam Cyclin, N-terminal domain 230 356 IPR006671 -
Lele01g0292 682 FunFam Mitotic cyclin 6 244 344 - -
Lele01g0292 682 ProSitePatterns Signal peptidases I signature 3. 644 657 IPR019758 GO:0004252|GO:0016020
Lele01g0292 682 SMART cyclin_7 363 451 IPR013763 -
Lele01g0292 682 SMART cyclin_7 266 350 IPR013763 -
Lele01g0292 682 MobiDBLite consensus disorder prediction 1 66 - -
Lele01g0292 682 SUPERFAMILY Cyclin-like 359 479 IPR036915 -
Lele01g0292 682 FunFam Peptidase/ serine-type peptidase 547 676 - -
Lele01g0292 682 TIGRFAM sigpep_I_bact: signal peptidase I 528 675 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele01g0292 682 PRINTS Bacterial leader peptidase 1 (S26A) family signature 538 554 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele01g0292 682 PRINTS Bacterial leader peptidase 1 (S26A) family signature 595 607 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele01g0292 682 PRINTS Bacterial leader peptidase 1 (S26A) family signature 639 658 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele01g0292 682 SUPERFAMILY Cyclin-like 220 356 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0292 Lele-ChrLele01 1667583 1675444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0292 2 479 Core Cell Cycle Gene Families AT1G44110 62.162 0.0 556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0292 01 1667583 1675444 Lele25g0240 25 1435822 1438012 CCT
Lele01g0292 01 1667583 1675444 Lele26g0249 26 1483917 1489295 CCT
Lele01g0292 01 1667583 1675444 Lele27g1847 27 23290079 23295848 CCT
Lele01g0292 01 1667583 1675444 Lele28g0262 28 1546283 1551643 CCT
Lele01g0292 01 1667583 1675444 Lele01g0292 01 1667583 1675444 ECH
Lele01g0292 01 1667583 1675444 Lele03g0295 03 1656507 1659172 hybridization
Lele01g0292 01 1667583 1675444 Lele04g0287 04 1687862 1705313 hybridization