Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele01g0276 ATGGATATCCTCCAATCAGTGACGGTTCTCTGTTTCACCTCGCGACAGAAATCGATGAACATGCTCCAAGTGAGACAACATCGTAATCTCCTGTGCCGGAGCGGTACTCTTGTGGCGCCCAGAGGGCTAACCCTCCAAATGTTCGATGAAATACCTATATGGGACACTTTTGCTTGGAATAATCTTATTCAAATCCATCTCTCAAATGGAGATTTCAACAGTGTATTATCAACTTACGATCAAATGCTACTTCGCGGTGTTCGTCCTGACAGACATACTCTTCCTCGCGTGGTTACTGCTACTCGTCTATTGGGCGATTTATCCATTGGTAGACAGGTTCATGGGCAAGCTCTGAAACTCGGAGTCTCCTCTGACCAGTACGCTATTACCGCTTTGATTGAGATGTATGGGCATCTAGATAGTGTGGATATGGCTAAATTGATATTCGACAAGTCTCCTCACCGGAATTTAGTGTCTTGGACGCTGCTTGCCAGATTATACGTTGATCAGGGAAAACCATGTTCGACCCTTGATTTATTCCATCAGATGGTGGACCTCGGGGTGCCTATTGATCCAGTTGCCTTATCAACAGCAACCAGTGCCTGTGGATTGCTAAAATCTCTGCAGAAAGGAAAACTTGTGCACGAGATTGCCAAGAAATGTGGATTAGAGTTTGATGTTTTAGTGAGTAATTCGCTCGTGAAAATGTATATAGATTGTGACAGTTTAAAAGATGCTCGGTTGATGTTTGATCAGATGCCTTTTAAGGATGTTATATCATGGACTATAATGTTTCGTTCTTATGTGAAGATAGGAGGATTCAACGAAGGTCTCAAATTATTTCGACAGATGAACCTGAATGGTTTGAAGCCTGATTCACTCTCAGTCGCCAGCATTCTCCCTGCTTGTGGGAGAATCGCTTCGCATAAACATGGTAAAGAAATTCATGGCTATTTGCTTAGAAACGGGATTCATTTAAACCTGAAGCTCAAGAATGCACTCATGGACATGTATGTGAAATCAGGAGCTATCGCTTGTGCTTCAAATATTTTTGCTGAACTGAATGAAAAAGATGCGATTACATGGACCGTGATGATATTGGGCTATAGCCTACACGGTCAAGGGAAGCTTGGAGTTGATTTTTTCTGCCAGATGGTGAAAAATTCGAAGGCACGTCTAGATAACGCCACCTATGCTGCTGTCCTTCATGCATGTAGCACCGCACGCTTGGTTGAGGAAGGGAAGTTTTACTTCAACCGCATAAGGTCGCCCACAGTGGCTCACTATGCTTTAATGGTTGCTCTGTTAGCACGAGCTGGGCTTTTTAATGAGGCGATGGCCTTTATTAAGGAACACAATATTGGAAAACATGCTGAGTTACAGAGAAAATTGCTAGAAGGGTGCAGGATTCACCGGCAACACACTCTAGGTAAGCGAGTGGCTGAGAAGCTCTGTGATTTGGAACCTCTAAGTGCTGAGAATTACGTGCTACTTCTGAACTACTATGCTGGGAATGCAAAGTGGCACATGGTAGATAAATTAAGGGAAACGATCAGAGACATGGGTTTGAAACCCAGAAAAGCCTATTCTTGGATCGTGTTCTGGAACAAAGTTCATGTCTTTGGAACTGGGGATAGATCGCATCCAAGATCAGCGAGAATATATTCGGAATTACAGCATTTCATGGAGGAAATGAGAATCCAAGGAGTTGAGCCTATCTGGGATTTCCACCTTCATGATGTAGATGAAGAGCGTGAGTGCATTCAGATTGGACACAGCGAATTATTAGCAATTTCCTTTGGGCTTATCAGTTCACGAGCGGGACCTATACGTGTTACCAAAAATCTCACGGTATGTCATGGGTGCCACGATTTTGCCAGGTTCATTTCCAAGACCACGGGAAGAGAAATCATTCTCAAGGACCCCAACCTATTTCATCATTTTAGGGACGGATTCTGTTCATGTGAGGATTTTTGGCGGAAAAGCCCTTGCTTAACATTAGCGCGGAGAGGTAAAAGAGTTGGGTTCTTTCGCTGTCGAAGGATGGAAACTGAGGATGGAACAAGCAATGGGGATAACACAGAATGTTCTGAAGCGGTTCAGTGCCTGAAGAGTGAAGCTGTAAATAATGGGGTTGCATATAGCAATGATATTAAAAAGAGGGTTCAACGCTTTAATAGTGAAGCTGTGAATAATGGGGTGGTAATTGCAGACAGGAACGATGTTGCTCAAGGGGACTCTTGTGTACTTGAAAGCTTTCGAACTTACAAGAGACGTAAGCATGTAAAGTTGAATTCAGAAAGCAAAGCTCCAGAAGATTGCAGAACATACTCAGAAGCTGCAAGTCACATAGCAGGCCAGGCTGTAAAGAAACCATGTAATGTAGCTGTAGGAAATACTTCGGATAAGCATTTACATGCACATTGGGGAAATGTTGTACTAATGCACTTGTATCAGTCATTAGGTGATGATAAAGGTGGCATAGAAGGGTGCATGAGGGAAGCTCTCATGCTCCGTCCTAAAATTAGTTGTGCCACTACTGTAAAGGAAACTTGTAAAATCGACAGAGTTGGACAGGATTACTCTCCACACTTTGAGCTGATGTCTCATACATTACGGAAGGAAGTTAATGGGCATGCAAATGTCTTGCGCAATGGATCTTGTAACGAGTCAGATGGTCCTGATGCAAATGAGATGTGTCAGCGTGTACTATGTAATGTCTTAGTCTCTGAGAAATTCAGTTCGTTATGTAAGGTGCTACTAGAAAATTTCAAAGGAATGAAGCCTGAAACTGTATTTGACTTAAGTGTCATAAACTCAAGGTTGAAAGAGCAAGCTTATGAACAGTCACCCACACTTTTTTTGTCAGATATTCAACAGGTTTGGAGAAAACTTCAAGACGCTGGTAATGAGATTGTTTCTCTTGCCAAGGGCCTTTCAAACATGTCAAGAACTTTCTACTGTGAGCAGGCTGGAGTTTTAGTGCATAGCAAATTTAAAGATGGAAAGCAGGAGCAGTTCTGTAACCAGGAATCTGATTCCCACATGAAACCGGAGCAGACAGAAGACCGTGGCATGTATAAGATTTGCACTTGCAGGCGTTGTGGAAACAAAGCAAACGGGACAGATTGTTTGGTTTGTGATTCATGTGAGATGTTCCGTAATTCCTGTATTGAGCCTCCTGTCAAAGAGATACCCCACAAGAGCTGGTACTGTGCCAAATGCACTGCTAGTGGAATCGGATCTCCACATGAAAGTTGCTTGGTATGTGAAAGGTTGAATGACTCAAAGACCCTGAACTTTGATGAAAGCTTCCCTTTAATTGAGGAAACAATTAATGAATTGGAAGATAATTCAAATTGCACCTACGATGGGGCTCAAGCATCTAGAAGGGGAAAAATTGACATGATCTGCAAAGTTTGTGAAAATGAAGTGGATGGTGAAAGAATTAAAATCTGCGGTCACTCTGCCTGCTCTAAGTACTATCATGTAAGGTGTTTGACAAGTAAACAGTCCACATCATATGGTCCCTGCTGGTACTGCCCTTCTTGCATATGCCAAGTTTGCCTCACTGATAAAGATGATTACCAGATCGTTCTGTGTGATGGCTGTGATGATGCTTACCACATATATTGCATGAAACCACCCCGAACTTCTATTCCCAAAGGAAAATGGTTCTGCAGAAAATGTGATACAGGGTTACAAGTAATACGACGGGCAAAAAAGTTATATGAGAGTAAAAAGCAGAGAAAAACGAGTGAAGATGGTTCAAAACCAGGGGATAGATTTGAAAAGAACTGGAACAATAAACACGGACACGGACGAGATTTGGATAAAGGTGGAGGAGTGGACATGCTTTTAACTGCAGCCAATACTTTGAATTTGGAAGAGGACTTGGCTGCCATCCGGACGTTGTGA 3918 0.4267 MDILQSVTVLCFTSRQKSMNMLQVRQHRNLLCRSGTLVAPRGLTLQMFDEIPIWDTFAWNNLIQIHLSNGDFNSVLSTYDQMLLRGVRPDRHTLPRVVTATRLLGDLSIGRQVHGQALKLGVSSDQYAITALIEMYGHLDSVDMAKLIFDKSPHRNLVSWTLLARLYVDQGKPCSTLDLFHQMVDLGVPIDPVALSTATSACGLLKSLQKGKLVHEIAKKCGLEFDVLVSNSLVKMYIDCDSLKDARLMFDQMPFKDVISWTIMFRSYVKIGGFNEGLKLFRQMNLNGLKPDSLSVASILPACGRIASHKHGKEIHGYLLRNGIHLNLKLKNALMDMYVKSGAIACASNIFAELNEKDAITWTVMILGYSLHGQGKLGVDFFCQMVKNSKARLDNATYAAVLHACSTARLVEEGKFYFNRIRSPTVAHYALMVALLARAGLFNEAMAFIKEHNIGKHAELQRKLLEGCRIHRQHTLGKRVAEKLCDLEPLSAENYVLLLNYYAGNAKWHMVDKLRETIRDMGLKPRKAYSWIVFWNKVHVFGTGDRSHPRSARIYSELQHFMEEMRIQGVEPIWDFHLHDVDEERECIQIGHSELLAISFGLISSRAGPIRVTKNLTVCHGCHDFARFISKTTGREIILKDPNLFHHFRDGFCSCEDFWRKSPCLTLARRGKRVGFFRCRRMETEDGTSNGDNTECSEAVQCLKSEAVNNGVAYSNDIKKRVQRFNSEAVNNGVVIADRNDVAQGDSCVLESFRTYKRRKHVKLNSESKAPEDCRTYSEAASHIAGQAVKKPCNVAVGNTSDKHLHAHWGNVVLMHLYQSLGDDKGGIEGCMREALMLRPKISCATTVKETCKIDRVGQDYSPHFELMSHTLRKEVNGHANVLRNGSCNESDGPDANEMCQRVLCNVLVSEKFSSLCKVLLENFKGMKPETVFDLSVINSRLKEQAYEQSPTLFLSDIQQVWRKLQDAGNEIVSLAKGLSNMSRTFYCEQAGVLVHSKFKDGKQEQFCNQESDSHMKPEQTEDRGMYKICTCRRCGNKANGTDCLVCDSCEMFRNSCIEPPVKEIPHKSWYCAKCTASGIGSPHESCLVCERLNDSKTLNFDESFPLIEETINELEDNSNCTYDGAQASRRGKIDMICKVCENEVDGERIKICGHSACSKYYHVRCLTSKQSTSYGPCWYCPSCICQVCLTDKDDYQIVLCDGCDDAYHIYCMKPPRTSIPKGKWFCRKCDTGLQVIRRAKKLYESKKQRKTSEDGSKPGDRFEKNWNNKHGHGRDLDKGGGVDMLLTAANTLNLEEDLAAIRTL 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele01g0276 1305 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 45 596 - -
Lele01g0276 1305 Gene3D - 936 1078 - -
Lele01g0276 1305 ProSiteProfiles Zinc finger PHD-type profile. 1135 1187 IPR019787 -
Lele01g0276 1305 FunFam pentatricopeptide repeat-containing protein At2g33680 331 553 - -
Lele01g0276 1305 Pfam PPR repeat 259 288 IPR002885 -
Lele01g0276 1305 Pfam PPR repeat 58 87 IPR002885 -
Lele01g0276 1305 Pfam PPR repeat 360 388 IPR002885 -
Lele01g0276 1305 SUPERFAMILY FYVE/PHD zinc finger 1027 1076 IPR011011 -
Lele01g0276 1305 FunFam Pentatricopeptide repeat-containing protein 163 312 - -
Lele01g0276 1305 SUPERFAMILY FYVE/PHD zinc finger 1185 1238 IPR011011 -
Lele01g0276 1305 TIGRFAM PPR: pentatricopeptide repeat domain 58 90 IPR002885 -
Lele01g0276 1305 TIGRFAM PPR: pentatricopeptide repeat domain 259 293 IPR002885 -
Lele01g0276 1305 FunFam PHD finger protein EHD3 isoform A 918 1079 - -
Lele01g0276 1305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1112 1185 IPR013083 -
Lele01g0276 1305 ProSiteProfiles Zinc finger PHD-type profile. 1183 1233 IPR019787 -
Lele01g0276 1305 ProSiteProfiles Zinc finger RING-type profile. 1138 1184 IPR001841 -
Lele01g0276 1305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1186 1232 IPR013083 -
Lele01g0276 1305 Gene3D Tetratricopeptide repeat domain 314 413 IPR011990 GO:0005515
Lele01g0276 1305 Gene3D Tetratricopeptide repeat domain 208 313 IPR011990 GO:0005515
Lele01g0276 1305 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Lele01g0276 1305 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 55 89 IPR002885 -
Lele01g0276 1305 MobiDBLite consensus disorder prediction 1245 1276 - -
Lele01g0276 1305 Gene3D Tetratricopeptide repeat domain 55 207 IPR011990 GO:0005515
Lele01g0276 1305 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Lele01g0276 1305 SMART PHD_3 1188 1231 IPR001965 -
Lele01g0276 1305 SMART PHD_3 1137 1185 IPR001965 -
Lele01g0276 1305 SMART PHD_3 1031 1076 IPR001965 -
Lele01g0276 1305 Pfam DYW family of nucleic acid deaminases 571 659 IPR032867 GO:0008270
Lele01g0276 1305 Pfam PHD-finger 1185 1231 IPR019787 -
Lele01g0276 1305 Pfam E motif 474 532 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele01g0276 Lele-ChrLele01 1547282 1555562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele01g0276 46 659 Glycoside Hydrolase AT3G49170 33.175 6.29e-104 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele01g0276 DYW_deaminase 7.1e-29 CL0109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0276 01 1547282 1555562 Lele01g0276 01 1547282 1555562 ECH
Lele01g0276 01 1547282 1555562 Lele03g0280 03 1542706 1547103 hybridization
Lele01g0276 01 1547282 1555562 Lele04g0267 04 1580470 1589679 hybridization